miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9171 3' -51.4 NC_002512.2 + 136104 0.66 0.994097
Target:  5'- cGCUGGCgGCggccACAGcGA-CGGGGAg -3'
miRNA:   3'- -UGACCGgCGaaa-UGUCuUUaGCCCUU- -5'
9171 3' -51.4 NC_002512.2 + 190072 0.67 0.991015
Target:  5'- aGCUGGCCGCggccggucaGCGGGcucggcugCGGGAc -3'
miRNA:   3'- -UGACCGGCGaaa------UGUCUuua-----GCCCUu -5'
9171 3' -51.4 NC_002512.2 + 185002 0.67 0.991015
Target:  5'- cGCUGcggcccgguGCCGCUgUACAGcgccgucGUCGGGGAg -3'
miRNA:   3'- -UGAC---------CGGCGAaAUGUCuu-----UAGCCCUU- -5'
9171 3' -51.4 NC_002512.2 + 118554 0.67 0.988339
Target:  5'- --cGGUCGCgu--CGGAcGUCGGGAGc -3'
miRNA:   3'- ugaCCGGCGaaauGUCUuUAGCCCUU- -5'
9171 3' -51.4 NC_002512.2 + 182300 0.67 0.986787
Target:  5'- cCUGGCCGU----CAGGGAcCGGGAc -3'
miRNA:   3'- uGACCGGCGaaauGUCUUUaGCCCUu -5'
9171 3' -51.4 NC_002512.2 + 133008 0.69 0.97394
Target:  5'- -aUGGCCGCcg-ACGGAGAacUGGGAGa -3'
miRNA:   3'- ugACCGGCGaaaUGUCUUUa-GCCCUU- -5'
9171 3' -51.4 NC_002512.2 + 176758 0.69 0.971132
Target:  5'- --gGGUCGCUUcggacgccUGCAGGGcUCGGGAc -3'
miRNA:   3'- ugaCCGGCGAA--------AUGUCUUuAGCCCUu -5'
9171 3' -51.4 NC_002512.2 + 52622 0.69 0.971132
Target:  5'- --cGGCUGUcauuCAGAAAUCGGGGu -3'
miRNA:   3'- ugaCCGGCGaaauGUCUUUAGCCCUu -5'
9171 3' -51.4 NC_002512.2 + 212365 0.7 0.952577
Target:  5'- aGCUGGCCGCc-UACGccgacgccgacgucGAGAUCGaGGAGg -3'
miRNA:   3'- -UGACCGGCGaaAUGU--------------CUUUAGC-CCUU- -5'
9171 3' -51.4 NC_002512.2 + 205222 0.71 0.930536
Target:  5'- --cGGCC-CgggACGGAGAUCGGGAc -3'
miRNA:   3'- ugaCCGGcGaaaUGUCUUUAGCCCUu -5'
9171 3' -51.4 NC_002512.2 + 221250 0.83 0.342526
Target:  5'- gGCcGGCCGCg--GCGGAAGUCGGGGGa -3'
miRNA:   3'- -UGaCCGGCGaaaUGUCUUUAGCCCUU- -5'
9171 3' -51.4 NC_002512.2 + 41469 1.06 0.015325
Target:  5'- gACUGGCCGCUUUACAGAAAUCGGGAAc -3'
miRNA:   3'- -UGACCGGCGAAAUGUCUUUAGCCCUU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.