miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9174 3' -58.5 NC_002512.2 + 37945 1.1 0.002276
Target:  5'- gUCGGAGACCCUAUCCCGGGCAGUGACa -3'
miRNA:   3'- -AGCCUCUGGGAUAGGGCCCGUCACUG- -5'
9174 3' -58.5 NC_002512.2 + 208033 0.8 0.21354
Target:  5'- gCGGAGACCCUggCCCGGGUGGUu-- -3'
miRNA:   3'- aGCCUCUGGGAuaGGGCCCGUCAcug -5'
9174 3' -58.5 NC_002512.2 + 39526 0.78 0.287891
Target:  5'- gUCGGuGACCau-UCCCGGGUGGUGAa -3'
miRNA:   3'- -AGCCuCUGGgauAGGGCCCGUCACUg -5'
9174 3' -58.5 NC_002512.2 + 181025 0.78 0.300988
Target:  5'- -gGGAGGCCCgcGUCCUGGGCAGgaGGCc -3'
miRNA:   3'- agCCUCUGGGa-UAGGGCCCGUCa-CUG- -5'
9174 3' -58.5 NC_002512.2 + 112755 0.72 0.587343
Target:  5'- gCGGAGAgCCggccGUCCCGGacaCGGUGGCc -3'
miRNA:   3'- aGCCUCUgGGa---UAGGGCCc--GUCACUG- -5'
9174 3' -58.5 NC_002512.2 + 186956 0.71 0.606838
Target:  5'- gCGGAGAuccCCCgcUCCCGGGCcGUccuGGCg -3'
miRNA:   3'- aGCCUCU---GGGauAGGGCCCGuCA---CUG- -5'
9174 3' -58.5 NC_002512.2 + 75764 0.71 0.616615
Target:  5'- gUCGGAGACCgCggagCCCGGG-AG-GACg -3'
miRNA:   3'- -AGCCUCUGG-Gaua-GGGCCCgUCaCUG- -5'
9174 3' -58.5 NC_002512.2 + 77230 0.71 0.636194
Target:  5'- -gGGAGGCgaaCgagcgCCCGGGCGGUGAg -3'
miRNA:   3'- agCCUCUGg--Gaua--GGGCCCGUCACUg -5'
9174 3' -58.5 NC_002512.2 + 129778 0.71 0.636194
Target:  5'- aCGGAGAgCUcGUCCCGGGCc--GGCa -3'
miRNA:   3'- aGCCUCUgGGaUAGGGCCCGucaCUG- -5'
9174 3' -58.5 NC_002512.2 + 199641 0.7 0.675258
Target:  5'- gCGGGGACCCguuUCCCGcGGaCGGaggagggggagaUGACg -3'
miRNA:   3'- aGCCUCUGGGau-AGGGC-CC-GUC------------ACUG- -5'
9174 3' -58.5 NC_002512.2 + 119314 0.7 0.684963
Target:  5'- -aGGAGAUCCUGaCCCG-GCAG-GACc -3'
miRNA:   3'- agCCUCUGGGAUaGGGCcCGUCaCUG- -5'
9174 3' -58.5 NC_002512.2 + 118594 0.7 0.694627
Target:  5'- aUCGGcGGCCCUcucCCCGcGGCGGccGACa -3'
miRNA:   3'- -AGCCuCUGGGAua-GGGC-CCGUCa-CUG- -5'
9174 3' -58.5 NC_002512.2 + 151096 0.7 0.713804
Target:  5'- cCGGAGACgUgcacgUGUCUCGGggcGCGGUGGCa -3'
miRNA:   3'- aGCCUCUGgG-----AUAGGGCC---CGUCACUG- -5'
9174 3' -58.5 NC_002512.2 + 121096 0.69 0.723301
Target:  5'- gCGGAGAUCCUGUaCUCGGGCuauccGAUc -3'
miRNA:   3'- aGCCUCUGGGAUA-GGGCCCGuca--CUG- -5'
9174 3' -58.5 NC_002512.2 + 47480 0.69 0.760491
Target:  5'- gCGGAGAacagCCUAUUCUGGGUAGUc-- -3'
miRNA:   3'- aGCCUCUg---GGAUAGGGCCCGUCAcug -5'
9174 3' -58.5 NC_002512.2 + 197889 0.69 0.769548
Target:  5'- aCGG-GACCCgguUCUCGGGgAGgggggGACg -3'
miRNA:   3'- aGCCuCUGGGau-AGGGCCCgUCa----CUG- -5'
9174 3' -58.5 NC_002512.2 + 144707 0.68 0.778494
Target:  5'- aCGG-GACCCgucgcgCCUGGGuCAGcUGGCg -3'
miRNA:   3'- aGCCuCUGGGaua---GGGCCC-GUC-ACUG- -5'
9174 3' -58.5 NC_002512.2 + 208683 0.68 0.778494
Target:  5'- cCGGGGGCCgCUGUCCCuGGaCGGguacccggGGCu -3'
miRNA:   3'- aGCCUCUGG-GAUAGGGcCC-GUCa-------CUG- -5'
9174 3' -58.5 NC_002512.2 + 191396 0.68 0.784684
Target:  5'- cUUGGAGaauauaaaaugagcGCCgUGgcggCCCGGGCGG-GACa -3'
miRNA:   3'- -AGCCUC--------------UGGgAUa---GGGCCCGUCaCUG- -5'
9174 3' -58.5 NC_002512.2 + 98211 0.68 0.787319
Target:  5'- cUCGGGGACCU--UCCCGaGCAGUc-- -3'
miRNA:   3'- -AGCCUCUGGGauAGGGCcCGUCAcug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.