miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9174 3' -58.5 NC_002512.2 + 33019 0.68 0.793421
Target:  5'- uUCGGGGGCgCCUGUgacacggguugggaaCGGGguGUGGCu -3'
miRNA:   3'- -AGCCUCUG-GGAUAgg-------------GCCCguCACUG- -5'
9174 3' -58.5 NC_002512.2 + 37945 1.1 0.002276
Target:  5'- gUCGGAGACCCUAUCCCGGGCAGUGACa -3'
miRNA:   3'- -AGCCUCUGGGAUAGGGCCCGUCACUG- -5'
9174 3' -58.5 NC_002512.2 + 39526 0.78 0.287891
Target:  5'- gUCGGuGACCau-UCCCGGGUGGUGAa -3'
miRNA:   3'- -AGCCuCUGGgauAGGGCCCGUCACUg -5'
9174 3' -58.5 NC_002512.2 + 47480 0.69 0.760491
Target:  5'- gCGGAGAacagCCUAUUCUGGGUAGUc-- -3'
miRNA:   3'- aGCCUCUg---GGAUAGGGCCCGUCAcug -5'
9174 3' -58.5 NC_002512.2 + 75764 0.71 0.616615
Target:  5'- gUCGGAGACCgCggagCCCGGG-AG-GACg -3'
miRNA:   3'- -AGCCUCUGG-Gaua-GGGCCCgUCaCUG- -5'
9174 3' -58.5 NC_002512.2 + 77230 0.71 0.636194
Target:  5'- -gGGAGGCgaaCgagcgCCCGGGCGGUGAg -3'
miRNA:   3'- agCCUCUGg--Gaua--GGGCCCGUCACUg -5'
9174 3' -58.5 NC_002512.2 + 92812 0.67 0.845102
Target:  5'- cCGG-GGCCUguUCCCGGGCGc-GGCg -3'
miRNA:   3'- aGCCuCUGGGauAGGGCCCGUcaCUG- -5'
9174 3' -58.5 NC_002512.2 + 98211 0.68 0.787319
Target:  5'- cUCGGGGACCU--UCCCGaGCAGUc-- -3'
miRNA:   3'- -AGCCUCUGGGauAGGGCcCGUCAcug -5'
9174 3' -58.5 NC_002512.2 + 99640 0.67 0.826153
Target:  5'- cUCGGAgGGCCCggcgcccgagccgAUCCCcGGCAGcucgGGCg -3'
miRNA:   3'- -AGCCU-CUGGGa------------UAGGGcCCGUCa---CUG- -5'
9174 3' -58.5 NC_002512.2 + 105815 0.68 0.812998
Target:  5'- gCGGAGAagCC---CCCGGGCAG-GGCc -3'
miRNA:   3'- aGCCUCUg-GGauaGGGCCCGUCaCUG- -5'
9174 3' -58.5 NC_002512.2 + 109053 0.67 0.860118
Target:  5'- cUCGGgggacgaccGGACCCgccgcGUCCCGGGUccgAGaGACc -3'
miRNA:   3'- -AGCC---------UCUGGGa----UAGGGCCCG---UCaCUG- -5'
9174 3' -58.5 NC_002512.2 + 111091 0.68 0.821267
Target:  5'- aCGGGGGCCCacagcUCCCGcccggcGGCGGaGGCg -3'
miRNA:   3'- aGCCUCUGGGau---AGGGC------CCGUCaCUG- -5'
9174 3' -58.5 NC_002512.2 + 112755 0.72 0.587343
Target:  5'- gCGGAGAgCCggccGUCCCGGacaCGGUGGCc -3'
miRNA:   3'- aGCCUCUgGGa---UAGGGCCc--GUCACUG- -5'
9174 3' -58.5 NC_002512.2 + 114157 0.66 0.881218
Target:  5'- -aGGAcGACCCgggCCCGGuccuccuCGGUGGCg -3'
miRNA:   3'- agCCU-CUGGGauaGGGCCc------GUCACUG- -5'
9174 3' -58.5 NC_002512.2 + 118594 0.7 0.694627
Target:  5'- aUCGGcGGCCCUcucCCCGcGGCGGccGACa -3'
miRNA:   3'- -AGCCuCUGGGAua-GGGC-CCGUCa-CUG- -5'
9174 3' -58.5 NC_002512.2 + 119314 0.7 0.684963
Target:  5'- -aGGAGAUCCUGaCCCG-GCAG-GACc -3'
miRNA:   3'- agCCUCUGGGAUaGGGCcCGUCaCUG- -5'
9174 3' -58.5 NC_002512.2 + 120335 0.68 0.821267
Target:  5'- gCGGAGAUCCgGUCCUgcacccagaaggGGGUguacgugcacgaGGUGACg -3'
miRNA:   3'- aGCCUCUGGGaUAGGG------------CCCG------------UCACUG- -5'
9174 3' -58.5 NC_002512.2 + 121096 0.69 0.723301
Target:  5'- gCGGAGAUCCUGUaCUCGGGCuauccGAUc -3'
miRNA:   3'- aGCCUCUGGGAUA-GGGCCCGuca--CUG- -5'
9174 3' -58.5 NC_002512.2 + 128392 0.66 0.881218
Target:  5'- gCGGcGGACCCcGUCUCGaGCccGGUGGCg -3'
miRNA:   3'- aGCC-UCUGGGaUAGGGCcCG--UCACUG- -5'
9174 3' -58.5 NC_002512.2 + 128428 0.67 0.837326
Target:  5'- cCGGAG-CCCUccUCgCGGGCGGccaUGGCc -3'
miRNA:   3'- aGCCUCuGGGAu-AGgGCCCGUC---ACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.