miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9174 5' -54.5 NC_002512.2 + 37980 1.12 0.004791
Target:  5'- aUCGUCACGCUCGAGGCGCGGAAAUCCc -3'
miRNA:   3'- -AGCAGUGCGAGCUCCGCGCCUUUAGG- -5'
9174 5' -54.5 NC_002512.2 + 219706 0.82 0.331744
Target:  5'- gCGUCgGCGCUCGGGGCGCGaGAGGcggCCc -3'
miRNA:   3'- aGCAG-UGCGAGCUCCGCGC-CUUUa--GG- -5'
9174 5' -54.5 NC_002512.2 + 95785 0.77 0.537359
Target:  5'- gCGUCcgagcgguagGCGC-CGGGGCGCGGA--UCCg -3'
miRNA:   3'- aGCAG----------UGCGaGCUCCGCGCCUuuAGG- -5'
9174 5' -54.5 NC_002512.2 + 223261 0.77 0.566501
Target:  5'- gCGUcCGCGUcgUCGGGGgGCGGGAcgCCg -3'
miRNA:   3'- aGCA-GUGCG--AGCUCCgCGCCUUuaGG- -5'
9174 5' -54.5 NC_002512.2 + 156510 0.76 0.596033
Target:  5'- gCGgcCugGgCggCGGGGCGCGGggGUCCg -3'
miRNA:   3'- aGCa-GugC-Ga-GCUCCGCGCCuuUAGG- -5'
9174 5' -54.5 NC_002512.2 + 151051 0.75 0.655583
Target:  5'- cCGUCACGCgguccUCGAcGGCGgGGGAugcggucucgGUCCg -3'
miRNA:   3'- aGCAGUGCG-----AGCU-CCGCgCCUU----------UAGG- -5'
9174 5' -54.5 NC_002512.2 + 33981 0.74 0.694045
Target:  5'- cUGUCGCGaCgggUGAGGCGUGGAGacuggcagacagcGUCCg -3'
miRNA:   3'- aGCAGUGC-Ga--GCUCCGCGCCUU-------------UAGG- -5'
9174 5' -54.5 NC_002512.2 + 126835 0.74 0.695024
Target:  5'- gUCGUCGCGCUCGu--CGCGGucGUCg -3'
miRNA:   3'- -AGCAGUGCGAGCuccGCGCCuuUAGg -5'
9174 5' -54.5 NC_002512.2 + 210553 0.74 0.714479
Target:  5'- aUCGUCugGUguaCGAGGuCGUGGAGAUg- -3'
miRNA:   3'- -AGCAGugCGa--GCUCC-GCGCCUUUAgg -5'
9174 5' -54.5 NC_002512.2 + 221434 0.74 0.724112
Target:  5'- cCGcCAUGCggaccgcggcCGGGGCGCGGucGUCCg -3'
miRNA:   3'- aGCaGUGCGa---------GCUCCGCGCCuuUAGG- -5'
9174 5' -54.5 NC_002512.2 + 174487 0.73 0.752529
Target:  5'- gCGgCACGCUCGgcgGGGCGCuGggGUUCu -3'
miRNA:   3'- aGCaGUGCGAGC---UCCGCGcCuuUAGG- -5'
9174 5' -54.5 NC_002512.2 + 119089 0.73 0.752529
Target:  5'- -gGUCGCGCgagGAGGUGCGGGcggCCu -3'
miRNA:   3'- agCAGUGCGag-CUCCGCGCCUuuaGG- -5'
9174 5' -54.5 NC_002512.2 + 119771 0.73 0.770987
Target:  5'- gCGUCGCGgUCGAcGGCGgGGAc--CCa -3'
miRNA:   3'- aGCAGUGCgAGCU-CCGCgCCUuuaGG- -5'
9174 5' -54.5 NC_002512.2 + 209945 0.73 0.780046
Target:  5'- uUCGUgcUGCUCGAccgGGCGCGGG--UCCu -3'
miRNA:   3'- -AGCAguGCGAGCU---CCGCGCCUuuAGG- -5'
9174 5' -54.5 NC_002512.2 + 131228 0.72 0.806439
Target:  5'- aCGUCGCGgUCgGAGGCcGCGGugg-CCu -3'
miRNA:   3'- aGCAGUGCgAG-CUCCG-CGCCuuuaGG- -5'
9174 5' -54.5 NC_002512.2 + 196402 0.72 0.806439
Target:  5'- -gGUCugGCgCGGGGaCGCGGggGgcggcggCCg -3'
miRNA:   3'- agCAGugCGaGCUCC-GCGCCuuUa------GG- -5'
9174 5' -54.5 NC_002512.2 + 224347 0.72 0.814949
Target:  5'- gCGcCGCGC-CGGGGuCGCGGGcgggagaccucGGUCCg -3'
miRNA:   3'- aGCaGUGCGaGCUCC-GCGCCU-----------UUAGG- -5'
9174 5' -54.5 NC_002512.2 + 155080 0.72 0.814949
Target:  5'- gUCGUgACGUUCGGGGUcCGGggGauugauucaccuUCCg -3'
miRNA:   3'- -AGCAgUGCGAGCUCCGcGCCuuU------------AGG- -5'
9174 5' -54.5 NC_002512.2 + 151102 0.72 0.821645
Target:  5'- aCGUgCACGUgucUCGGGGCGCGGuggcacgugCCu -3'
miRNA:   3'- aGCA-GUGCG---AGCUCCGCGCCuuua-----GG- -5'
9174 5' -54.5 NC_002512.2 + 225485 0.72 0.823303
Target:  5'- cCGUCGacCGCgaucuaCGGGGCcgccGCGGggGUCCc -3'
miRNA:   3'- aGCAGU--GCGa-----GCUCCG----CGCCuuUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.