miRNA display CGI


Results 1 - 20 of 100 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9174 5' -54.5 NC_002512.2 + 3695 0.66 0.983659
Target:  5'- cCG-CGCGCUaacGGCGCGGccGUCUc -3'
miRNA:   3'- aGCaGUGCGAgcuCCGCGCCuuUAGG- -5'
9174 5' -54.5 NC_002512.2 + 33981 0.74 0.694045
Target:  5'- cUGUCGCGaCgggUGAGGCGUGGAGacuggcagacagcGUCCg -3'
miRNA:   3'- aGCAGUGC-Ga--GCUCCGCGCCUU-------------UAGG- -5'
9174 5' -54.5 NC_002512.2 + 37980 1.12 0.004791
Target:  5'- aUCGUCACGCUCGAGGCGCGGAAAUCCc -3'
miRNA:   3'- -AGCAGUGCGAGCUCCGCGCCUUUAGG- -5'
9174 5' -54.5 NC_002512.2 + 74580 0.66 0.986996
Target:  5'- gCGcUCuggUGCUCGAGGC-CGGGGcccUCCg -3'
miRNA:   3'- aGC-AGu--GCGAGCUCCGcGCCUUu--AGG- -5'
9174 5' -54.5 NC_002512.2 + 77461 0.69 0.914781
Target:  5'- aUCGcCACGCgCGucGC-CGGGGAUCCc -3'
miRNA:   3'- -AGCaGUGCGaGCucCGcGCCUUUAGG- -5'
9174 5' -54.5 NC_002512.2 + 82226 0.67 0.968009
Target:  5'- gUCGUCGCGCccccgCGAggagggaugcgaagaGGCGgGGAGgAUCg -3'
miRNA:   3'- -AGCAGUGCGa----GCU---------------CCGCgCCUU-UAGg -5'
9174 5' -54.5 NC_002512.2 + 89342 0.68 0.960293
Target:  5'- cUCGUgCAC-CUCGGuGGcCGCGGAGAUg- -3'
miRNA:   3'- -AGCA-GUGcGAGCU-CC-GCGCCUUUAgg -5'
9174 5' -54.5 NC_002512.2 + 93272 0.66 0.977491
Target:  5'- -gGcCACGCUgGAgGGCGCGGc---CCg -3'
miRNA:   3'- agCaGUGCGAgCU-CCGCGCCuuuaGG- -5'
9174 5' -54.5 NC_002512.2 + 94285 0.66 0.981766
Target:  5'- gCGUcCACgGC-CGGGGaGCGGucGUCCa -3'
miRNA:   3'- aGCA-GUG-CGaGCUCCgCGCCuuUAGG- -5'
9174 5' -54.5 NC_002512.2 + 95785 0.77 0.537359
Target:  5'- gCGUCcgagcgguagGCGC-CGGGGCGCGGA--UCCg -3'
miRNA:   3'- aGCAG----------UGCGaGCUCCGCGCCUuuAGG- -5'
9174 5' -54.5 NC_002512.2 + 98164 0.66 0.977491
Target:  5'- gUCGcCGCGgUCuggacGGGCGCGGcgaccGUCCg -3'
miRNA:   3'- -AGCaGUGCgAGc----UCCGCGCCuu---UAGG- -5'
9174 5' -54.5 NC_002512.2 + 99536 0.66 0.977491
Target:  5'- gUGUCcCGCUCGAugcagcgcaggaGGCGCGuGAA--CCg -3'
miRNA:   3'- aGCAGuGCGAGCU------------CCGCGC-CUUuaGG- -5'
9174 5' -54.5 NC_002512.2 + 99622 0.67 0.975097
Target:  5'- cUCGUCGCGgUCGucGCccuCGGAGggCCc -3'
miRNA:   3'- -AGCAGUGCgAGCucCGc--GCCUUuaGG- -5'
9174 5' -54.5 NC_002512.2 + 100582 0.68 0.960293
Target:  5'- cCGg-GCGCUCG-GGUGgGGAAA-CCg -3'
miRNA:   3'- aGCagUGCGAGCuCCGCgCCUUUaGG- -5'
9174 5' -54.5 NC_002512.2 + 103442 0.66 0.9854
Target:  5'- gUCGUCccgguccgaGCGCgggucCGAGGaCGCGGcucGGGUCUc -3'
miRNA:   3'- -AGCAG---------UGCGa----GCUCC-GCGCC---UUUAGG- -5'
9174 5' -54.5 NC_002512.2 + 106771 0.66 0.977491
Target:  5'- aCGgC-CGC-CGAcGGCGCGGGAcgguUCCg -3'
miRNA:   3'- aGCaGuGCGaGCU-CCGCGCCUUu---AGG- -5'
9174 5' -54.5 NC_002512.2 + 106872 0.68 0.95295
Target:  5'- cUCGUCGCGCaCGAGcaGC-CGGA--UCCu -3'
miRNA:   3'- -AGCAGUGCGaGCUC--CGcGCCUuuAGG- -5'
9174 5' -54.5 NC_002512.2 + 106968 0.69 0.920338
Target:  5'- gCGcUCGCGCUCGuccccguagaAGGC-CGGGAcgCCc -3'
miRNA:   3'- aGC-AGUGCGAGC----------UCCGcGCCUUuaGG- -5'
9174 5' -54.5 NC_002512.2 + 108124 0.66 0.977491
Target:  5'- -gGUC-CGCggucccgaGAGGCGCGcGAAGagcUCCg -3'
miRNA:   3'- agCAGuGCGag------CUCCGCGC-CUUU---AGG- -5'
9174 5' -54.5 NC_002512.2 + 108343 0.67 0.966803
Target:  5'- gCGUCucgUGCUCGAccccGGCGCgccGGAGcUCCc -3'
miRNA:   3'- aGCAGu--GCGAGCU----CCGCG---CCUUuAGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.