miRNA display CGI


Results 1 - 20 of 68 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9175 3' -58.5 NC_002512.2 + 36196 1.1 0.002682
Target:  5'- uGCAACCGGCCCCUAUCCGAGGUCCGAc -3'
miRNA:   3'- -CGUUGGCCGGGGAUAGGCUCCAGGCU- -5'
9175 3' -58.5 NC_002512.2 + 109061 0.74 0.487425
Target:  5'- aCGACCGGaCCCgccgcGUCCcGGGUCCGAg -3'
miRNA:   3'- cGUUGGCCgGGGa----UAGGcUCCAGGCU- -5'
9175 3' -58.5 NC_002512.2 + 201065 0.73 0.552436
Target:  5'- uCGACCgGGCCCacaUGUgCGGGGUCUGGg -3'
miRNA:   3'- cGUUGG-CCGGGg--AUAgGCUCCAGGCU- -5'
9175 3' -58.5 NC_002512.2 + 129550 0.72 0.581127
Target:  5'- cGUGGCCGGCgCCCgccaGUcCCGAGGcgCCGGg -3'
miRNA:   3'- -CGUUGGCCG-GGGa---UA-GGCUCCa-GGCU- -5'
9175 3' -58.5 NC_002512.2 + 160751 0.72 0.590763
Target:  5'- gGC-GCCGGCCCCgggcaCgGAGGUCCc- -3'
miRNA:   3'- -CGuUGGCCGGGGaua--GgCUCCAGGcu -5'
9175 3' -58.5 NC_002512.2 + 180220 0.72 0.610112
Target:  5'- gGCuGCCGGCCCgCgccCCGuacgugGGGUCCGAc -3'
miRNA:   3'- -CGuUGGCCGGG-GauaGGC------UCCAGGCU- -5'
9175 3' -58.5 NC_002512.2 + 107882 0.72 0.619812
Target:  5'- cGCcuCCGGCCCC--UCCGGGcG-CCGAu -3'
miRNA:   3'- -CGuuGGCCGGGGauAGGCUC-CaGGCU- -5'
9175 3' -58.5 NC_002512.2 + 125181 0.72 0.619812
Target:  5'- cGUGGCCGGCCCCU-UCC-AGGUggCCGu -3'
miRNA:   3'- -CGUUGGCCGGGGAuAGGcUCCA--GGCu -5'
9175 3' -58.5 NC_002512.2 + 114119 0.71 0.648935
Target:  5'- aGCAcgGCaCGGCCaCCgGUCCGAGGagcagCCGGc -3'
miRNA:   3'- -CGU--UG-GCCGG-GGaUAGGCUCCa----GGCU- -5'
9175 3' -58.5 NC_002512.2 + 201846 0.71 0.648935
Target:  5'- cGCGGCCGGCagcucgCCUGgggcCUGcGGUCCGAg -3'
miRNA:   3'- -CGUUGGCCGg-----GGAUa---GGCuCCAGGCU- -5'
9175 3' -58.5 NC_002512.2 + 145381 0.71 0.658628
Target:  5'- aCGACUGGgagCCCgacgcggcGUCCGGGGUCCGGg -3'
miRNA:   3'- cGUUGGCCg--GGGa-------UAGGCUCCAGGCU- -5'
9175 3' -58.5 NC_002512.2 + 223008 0.71 0.665403
Target:  5'- aGCGGCaCGGCCCagggacggGUCgucgcccacuccggCGAGGUCCGGg -3'
miRNA:   3'- -CGUUG-GCCGGGga------UAG--------------GCUCCAGGCU- -5'
9175 3' -58.5 NC_002512.2 + 102675 0.71 0.67795
Target:  5'- gGCGGCC-GCCCgCUGUCCGGGGaggacguggCUGAg -3'
miRNA:   3'- -CGUUGGcCGGG-GAUAGGCUCCa--------GGCU- -5'
9175 3' -58.5 NC_002512.2 + 156722 0.71 0.67795
Target:  5'- cGCAGCUGGUCUC-GUCCGucGUCUGGu -3'
miRNA:   3'- -CGUUGGCCGGGGaUAGGCucCAGGCU- -5'
9175 3' -58.5 NC_002512.2 + 106142 0.7 0.697136
Target:  5'- aGCuccGCCaGGUCCCgaccCCGcAGGUCCGAg -3'
miRNA:   3'- -CGu--UGG-CCGGGGaua-GGC-UCCAGGCU- -5'
9175 3' -58.5 NC_002512.2 + 227967 0.7 0.734857
Target:  5'- -gAGCCggagaggagGGCCCCggcgCCGAGGgCCGAg -3'
miRNA:   3'- cgUUGG---------CCGGGGaua-GGCUCCaGGCU- -5'
9175 3' -58.5 NC_002512.2 + 98144 0.7 0.734857
Target:  5'- cGCGGCCGcccGCCCCggcggucgCCGcGGUCUGGa -3'
miRNA:   3'- -CGUUGGC---CGGGGaua-----GGCuCCAGGCU- -5'
9175 3' -58.5 NC_002512.2 + 155617 0.7 0.734857
Target:  5'- aCGugCGGCgCCUGUgCGAGGagagCCGGc -3'
miRNA:   3'- cGUugGCCGgGGAUAgGCUCCa---GGCU- -5'
9175 3' -58.5 NC_002512.2 + 214788 0.69 0.753267
Target:  5'- cGCccuCCGGguCCCCUGgucgCgGAGGUCCGu -3'
miRNA:   3'- -CGuu-GGCC--GGGGAUa---GgCUCCAGGCu -5'
9175 3' -58.5 NC_002512.2 + 184694 0.69 0.753267
Target:  5'- cGCcGCCGGUCCCgg-UCGAGaccUCCGAg -3'
miRNA:   3'- -CGuUGGCCGGGGauaGGCUCc--AGGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.