miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9175 3' -58.5 NC_002512.2 + 34506 0.66 0.912497
Target:  5'- cGgAACCGaGCguggaCCUAUCCGAGGacgCCa- -3'
miRNA:   3'- -CgUUGGC-CGg----GGAUAGGCUCCa--GGcu -5'
9175 3' -58.5 NC_002512.2 + 36196 1.1 0.002682
Target:  5'- uGCAACCGGCCCCUAUCCGAGGUCCGAc -3'
miRNA:   3'- -CGUUGGCCGGGGAUAGGCUCCAGGCU- -5'
9175 3' -58.5 NC_002512.2 + 90639 0.66 0.894666
Target:  5'- cGCGAcCCGGCgCCgcggCCGcGGUCuCGGa -3'
miRNA:   3'- -CGUU-GGCCGgGGaua-GGCuCCAG-GCU- -5'
9175 3' -58.5 NC_002512.2 + 95763 0.67 0.881742
Target:  5'- cGCGA-CGGCCgCCUGgaCGGGGgcgUCCGAg -3'
miRNA:   3'- -CGUUgGCCGG-GGAUagGCUCC---AGGCU- -5'
9175 3' -58.5 NC_002512.2 + 98144 0.7 0.734857
Target:  5'- cGCGGCCGcccGCCCCggcggucgCCGcGGUCUGGa -3'
miRNA:   3'- -CGUUGGC---CGGGGaua-----GGCuCCAGGCU- -5'
9175 3' -58.5 NC_002512.2 + 101212 0.67 0.881742
Target:  5'- aCGA-CGGCCCC-GUCCGccGGGuUCCGGc -3'
miRNA:   3'- cGUUgGCCGGGGaUAGGC--UCC-AGGCU- -5'
9175 3' -58.5 NC_002512.2 + 102235 0.69 0.788872
Target:  5'- ---cUCGGCgCUCUGUCCGAcccgggcccgGGUCCGGg -3'
miRNA:   3'- cguuGGCCG-GGGAUAGGCU----------CCAGGCU- -5'
9175 3' -58.5 NC_002512.2 + 102675 0.71 0.67795
Target:  5'- gGCGGCC-GCCCgCUGUCCGGGGaggacguggCUGAg -3'
miRNA:   3'- -CGUUGGcCGGG-GAUAGGCUCCa--------GGCU- -5'
9175 3' -58.5 NC_002512.2 + 105198 0.67 0.86802
Target:  5'- cGCAGCaGGCCgUgua--GAGGUCCGAg -3'
miRNA:   3'- -CGUUGgCCGGgGauaggCUCCAGGCU- -5'
9175 3' -58.5 NC_002512.2 + 106142 0.7 0.697136
Target:  5'- aGCuccGCCaGGUCCCgaccCCGcAGGUCCGAg -3'
miRNA:   3'- -CGu--UGG-CCGGGGaua-GGC-UCCAGGCU- -5'
9175 3' -58.5 NC_002512.2 + 107882 0.72 0.619812
Target:  5'- cGCcuCCGGCCCC--UCCGGGcG-CCGAu -3'
miRNA:   3'- -CGuuGGCCGGGGauAGGCUC-CaGGCU- -5'
9175 3' -58.5 NC_002512.2 + 109061 0.74 0.487425
Target:  5'- aCGACCGGaCCCgccgcGUCCcGGGUCCGAg -3'
miRNA:   3'- cGUUGGCCgGGGa----UAGGcUCCAGGCU- -5'
9175 3' -58.5 NC_002512.2 + 113147 0.67 0.86802
Target:  5'- cGCGgggcGCCGGCCUCg--CCGcGG-CCGGg -3'
miRNA:   3'- -CGU----UGGCCGGGGauaGGCuCCaGGCU- -5'
9175 3' -58.5 NC_002512.2 + 113658 0.68 0.805943
Target:  5'- cGCGGCCGGCCgCgaggGUgCGcgcGGGUCgGAc -3'
miRNA:   3'- -CGUUGGCCGGgGa---UAgGC---UCCAGgCU- -5'
9175 3' -58.5 NC_002512.2 + 114119 0.71 0.648935
Target:  5'- aGCAcgGCaCGGCCaCCgGUCCGAGGagcagCCGGc -3'
miRNA:   3'- -CGU--UG-GCCGG-GGaUAGGCUCCa----GGCU- -5'
9175 3' -58.5 NC_002512.2 + 114421 0.67 0.874979
Target:  5'- uCGACCGGCUCCca--CGcGGUCCGc -3'
miRNA:   3'- cGUUGGCCGGGGauagGCuCCAGGCu -5'
9175 3' -58.5 NC_002512.2 + 115838 0.69 0.762332
Target:  5'- uGCAcgacGCgGGCCCCUGcCuCGAGGcguucgCCGAg -3'
miRNA:   3'- -CGU----UGgCCGGGGAUaG-GCUCCa-----GGCU- -5'
9175 3' -58.5 NC_002512.2 + 121434 0.69 0.788872
Target:  5'- cGCGGagUCGGCCCCggagCCcugaGGGGUCCGc -3'
miRNA:   3'- -CGUU--GGCCGGGGaua-GG----CUCCAGGCu -5'
9175 3' -58.5 NC_002512.2 + 124777 0.67 0.860871
Target:  5'- aCGACCGcgcaGUCCCggGUCCG-GGUCCa- -3'
miRNA:   3'- cGUUGGC----CGGGGa-UAGGCuCCAGGcu -5'
9175 3' -58.5 NC_002512.2 + 125181 0.72 0.619812
Target:  5'- cGUGGCCGGCCCCU-UCC-AGGUggCCGu -3'
miRNA:   3'- -CGUUGGCCGGGGAuAGGcUCCA--GGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.