miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9175 5' -58.6 NC_002512.2 + 36233 1.05 0.004832
Target:  5'- gUCCCGAGGACGACGGCGAGUAGCGAUu -3'
miRNA:   3'- -AGGGCUCCUGCUGCCGCUCAUCGCUA- -5'
9175 5' -58.6 NC_002512.2 + 189901 0.8 0.228626
Target:  5'- --gCGAGGACGGCGGCGAGgacGGCGGc -3'
miRNA:   3'- aggGCUCCUGCUGCCGCUCa--UCGCUa -5'
9175 5' -58.6 NC_002512.2 + 196183 0.78 0.280806
Target:  5'- gCCCGAGGggGCGACGGCcGGGUcccuGGCGAg -3'
miRNA:   3'- aGGGCUCC--UGCUGCCG-CUCA----UCGCUa -5'
9175 5' -58.6 NC_002512.2 + 221595 0.76 0.364448
Target:  5'- aCCCGGaggggggucGGugGACGGCGAGgagggAGCGGg -3'
miRNA:   3'- aGGGCU---------CCugCUGCCGCUCa----UCGCUa -5'
9175 5' -58.6 NC_002512.2 + 166447 0.76 0.379961
Target:  5'- cUCCGGGGGCGACGGCGccGGgcucgagGGCGGg -3'
miRNA:   3'- aGGGCUCCUGCUGCCGC--UCa------UCGCUa -5'
9175 5' -58.6 NC_002512.2 + 170793 0.74 0.463811
Target:  5'- gCgCGAcGACGGCGGCGAGgggAGCGAc -3'
miRNA:   3'- aGgGCUcCUGCUGCCGCUCa--UCGCUa -5'
9175 5' -58.6 NC_002512.2 + 193591 0.74 0.481725
Target:  5'- cUCCgCGGGGACGACaGGgGAGUGacGCGGg -3'
miRNA:   3'- -AGG-GCUCCUGCUG-CCgCUCAU--CGCUa -5'
9175 5' -58.6 NC_002512.2 + 219688 0.74 0.481725
Target:  5'- gCCCGAGGACGAggaggagcguCGGCGcucgGGgcGCGAg -3'
miRNA:   3'- aGGGCUCCUGCU----------GCCGC----UCauCGCUa -5'
9175 5' -58.6 NC_002512.2 + 127086 0.74 0.490807
Target:  5'- uUCCCggagcgGAGGGCGGCGGCG-GcGGCGGg -3'
miRNA:   3'- -AGGG------CUCCUGCUGCCGCuCaUCGCUa -5'
9175 5' -58.6 NC_002512.2 + 227614 0.73 0.508277
Target:  5'- gCCgGAGGgcgggcgGCGGCGGCGAGgucaGGCGAc -3'
miRNA:   3'- aGGgCUCC-------UGCUGCCGCUCa---UCGCUa -5'
9175 5' -58.6 NC_002512.2 + 157149 0.73 0.51851
Target:  5'- gCCCG-GGGCgGGCGGCGGGccgGGCGGc -3'
miRNA:   3'- aGGGCuCCUG-CUGCCGCUCa--UCGCUa -5'
9175 5' -58.6 NC_002512.2 + 99082 0.73 0.51851
Target:  5'- -gCUGAGGAUgaaGGCGGCGAagGUGGCGAg -3'
miRNA:   3'- agGGCUCCUG---CUGCCGCU--CAUCGCUa -5'
9175 5' -58.6 NC_002512.2 + 75346 0.73 0.546812
Target:  5'- -aCCGAGGcggaGGCGGCGgaccGGUAGCGAUc -3'
miRNA:   3'- agGGCUCCug--CUGCCGC----UCAUCGCUA- -5'
9175 5' -58.6 NC_002512.2 + 99978 0.73 0.550624
Target:  5'- cCCCGAGGAgacgggagagcggauCGuCGGCGAG-GGCGAc -3'
miRNA:   3'- aGGGCUCCU---------------GCuGCCGCUCaUCGCUa -5'
9175 5' -58.6 NC_002512.2 + 227692 0.72 0.575586
Target:  5'- -aCCGAGacgacGACGGCGGCGGGggcGCGGUa -3'
miRNA:   3'- agGGCUC-----CUGCUGCCGCUCau-CGCUA- -5'
9175 5' -58.6 NC_002512.2 + 213910 0.72 0.585258
Target:  5'- cCCCGGGGGagauCGaccGCGGCGAGU-GCGAc -3'
miRNA:   3'- aGGGCUCCU----GC---UGCCGCUCAuCGCUa -5'
9175 5' -58.6 NC_002512.2 + 90559 0.72 0.594961
Target:  5'- ---gGAGGACGAgGGCGAG-GGCGAc -3'
miRNA:   3'- agggCUCCUGCUgCCGCUCaUCGCUa -5'
9175 5' -58.6 NC_002512.2 + 137239 0.72 0.604688
Target:  5'- gUCCCGAcgaGGAcacCGGCGGCGAGcgcuGCGGg -3'
miRNA:   3'- -AGGGCU---CCU---GCUGCCGCUCau--CGCUa -5'
9175 5' -58.6 NC_002512.2 + 125127 0.72 0.604688
Target:  5'- gUCCGAccgGGACGACGGCGAcgaGgacGGCGAc -3'
miRNA:   3'- aGGGCU---CCUGCUGCCGCU---Ca--UCGCUa -5'
9175 5' -58.6 NC_002512.2 + 194987 0.71 0.624193
Target:  5'- cUCCUcucggcgcaaGAGGGCGACGGCG-GUcccGGCGGc -3'
miRNA:   3'- -AGGG----------CUCCUGCUGCCGCuCA---UCGCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.