miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9175 5' -58.6 NC_002512.2 + 5196 0.67 0.827068
Target:  5'- cCCCGAGG-CGAcCGGaccucCGAGUGGCu-- -3'
miRNA:   3'- aGGGCUCCuGCU-GCC-----GCUCAUCGcua -5'
9175 5' -58.6 NC_002512.2 + 36233 1.05 0.004832
Target:  5'- gUCCCGAGGACGACGGCGAGUAGCGAUu -3'
miRNA:   3'- -AGGGCUCCUGCUGCCGCUCAUCGCUA- -5'
9175 5' -58.6 NC_002512.2 + 39537 0.67 0.860857
Target:  5'- uUCCCGgguggugaaggacgcGGGACGgugccaaggGCGGCGAcgGGCGAc -3'
miRNA:   3'- -AGGGC---------------UCCUGC---------UGCCGCUcaUCGCUa -5'
9175 5' -58.6 NC_002512.2 + 71557 0.66 0.885823
Target:  5'- aCCUGAGGACGACGaG-GAc-AGCGAc -3'
miRNA:   3'- aGGGCUCCUGCUGC-CgCUcaUCGCUa -5'
9175 5' -58.6 NC_002512.2 + 75260 0.67 0.826262
Target:  5'- gUCCCGuccccacgauggcGGcGACGGCGGCGgcGGcGGCGAc -3'
miRNA:   3'- -AGGGC-------------UC-CUGCUGCCGC--UCaUCGCUa -5'
9175 5' -58.6 NC_002512.2 + 75346 0.73 0.546812
Target:  5'- -aCCGAGGcggaGGCGGCGgaccGGUAGCGAUc -3'
miRNA:   3'- agGGCUCCug--CUGCCGC----UCAUCGCUA- -5'
9175 5' -58.6 NC_002512.2 + 75779 0.66 0.904618
Target:  5'- gCCCG-GGAgGACGGgGcAG-AGCGGg -3'
miRNA:   3'- aGGGCuCCUgCUGCCgC-UCaUCGCUa -5'
9175 5' -58.6 NC_002512.2 + 81831 0.66 0.898562
Target:  5'- cUCCgaGAGGACGACGaCGAGcgAGgGGa -3'
miRNA:   3'- -AGGg-CUCCUGCUGCcGCUCa-UCgCUa -5'
9175 5' -58.6 NC_002512.2 + 90511 0.67 0.832666
Target:  5'- -gCCGAGGcCGGCGGCGgacgacgggaacgcGGUGGgGGa -3'
miRNA:   3'- agGGCUCCuGCUGCCGC--------------UCAUCgCUa -5'
9175 5' -58.6 NC_002512.2 + 90559 0.72 0.594961
Target:  5'- ---gGAGGACGAgGGCGAG-GGCGAc -3'
miRNA:   3'- agggCUCCUGCUgCCGCUCaUCGCUa -5'
9175 5' -58.6 NC_002512.2 + 92604 0.68 0.802208
Target:  5'- gUCCCGAGGccggucgcgACGACGGaCGGacGGCGGc -3'
miRNA:   3'- -AGGGCUCC---------UGCUGCC-GCUcaUCGCUa -5'
9175 5' -58.6 NC_002512.2 + 94399 0.67 0.835041
Target:  5'- aUCuuGAGGACGGCGGUcu-UGGCGc- -3'
miRNA:   3'- -AGggCUCCUGCUGCCGcucAUCGCua -5'
9175 5' -58.6 NC_002512.2 + 96207 0.66 0.894828
Target:  5'- gCCgCGAGGucggccacggcggccGCGGCGGCG-GcGGCGAc -3'
miRNA:   3'- aGG-GCUCC---------------UGCUGCCGCuCaUCGCUa -5'
9175 5' -58.6 NC_002512.2 + 97103 0.68 0.810645
Target:  5'- --gCGGGGGCGACGGCaAGcgGGUGAa -3'
miRNA:   3'- aggGCUCCUGCUGCCGcUCa-UCGCUa -5'
9175 5' -58.6 NC_002512.2 + 97817 0.66 0.872267
Target:  5'- cUCCGGGGACG-CGGaguaGAG-GGCGGc -3'
miRNA:   3'- aGGGCUCCUGCuGCCg---CUCaUCGCUa -5'
9175 5' -58.6 NC_002512.2 + 99082 0.73 0.51851
Target:  5'- -gCUGAGGAUgaaGGCGGCGAagGUGGCGAg -3'
miRNA:   3'- agGGCUCCUG---CUGCCGCU--CAUCGCUa -5'
9175 5' -58.6 NC_002512.2 + 99264 0.68 0.802208
Target:  5'- cCCCGAGGACGcCGgacGCGGGgucgAGCa-- -3'
miRNA:   3'- aGGGCUCCUGCuGC---CGCUCa---UCGcua -5'
9175 5' -58.6 NC_002512.2 + 99978 0.73 0.550624
Target:  5'- cCCCGAGGAgacgggagagcggauCGuCGGCGAG-GGCGAc -3'
miRNA:   3'- aGGGCUCCU---------------GCuGCCGCUCaUCGCUa -5'
9175 5' -58.6 NC_002512.2 + 101418 0.69 0.730318
Target:  5'- cUUCCGAGGGCacaGCGGCGGccGGCGGc -3'
miRNA:   3'- -AGGGCUCCUGc--UGCCGCUcaUCGCUa -5'
9175 5' -58.6 NC_002512.2 + 102405 0.68 0.810645
Target:  5'- gCCCGAGGGCGGCGGCca----CGAa -3'
miRNA:   3'- aGGGCUCCUGCUGCCGcucaucGCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.