miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9176 3' -58.6 NC_002512.2 + 166462 0.69 0.737254
Target:  5'- cGCCGggcucgagGGCGGGGaCG-GCgGGACcgCGg -3'
miRNA:   3'- -CGGCa-------CCGCCUC-GCaCGgUCUGuaGC- -5'
9176 3' -58.6 NC_002512.2 + 167730 0.74 0.462235
Target:  5'- cUCGUcGaGCGGGGCGaggagcUGCCGGGCGUCGg -3'
miRNA:   3'- cGGCA-C-CGCCUCGC------ACGGUCUGUAGC- -5'
9176 3' -58.6 NC_002512.2 + 177679 0.67 0.835909
Target:  5'- cGCCGccaguuugcgguagaUGGggaucaGGGGCuucccccaggucGUGCCGGACAUCGu -3'
miRNA:   3'- -CGGC---------------ACCg-----CCUCG------------CACGGUCUGUAGC- -5'
9176 3' -58.6 NC_002512.2 + 185998 0.68 0.823949
Target:  5'- cGCCGUGGUGGGuCGU-CCGGcaccuggacgccuGCGUCGc -3'
miRNA:   3'- -CGGCACCGCCUcGCAcGGUC-------------UGUAGC- -5'
9176 3' -58.6 NC_002512.2 + 191416 0.71 0.651198
Target:  5'- cGCCGUGGCGGccCGgGCgGGACAgUCa -3'
miRNA:   3'- -CGGCACCGCCucGCaCGgUCUGU-AGc -5'
9176 3' -58.6 NC_002512.2 + 193452 0.68 0.79125
Target:  5'- cGCCgGUGGCgGGAGCGgGCCcuccgGGACGa-- -3'
miRNA:   3'- -CGG-CACCG-CCUCGCaCGG-----UCUGUagc -5'
9176 3' -58.6 NC_002512.2 + 195785 0.66 0.890305
Target:  5'- aGCC-UGGaCGuGGGCGUGUUgcuccgcugcggGGACAUCGu -3'
miRNA:   3'- -CGGcACC-GC-CUCGCACGG------------UCUGUAGC- -5'
9176 3' -58.6 NC_002512.2 + 207771 0.71 0.631733
Target:  5'- cGCCGUGGUGGuugcgggacGGCGUcgucucccgGCCGGACGa-- -3'
miRNA:   3'- -CGGCACCGCC---------UCGCA---------CGGUCUGUagc -5'
9176 3' -58.6 NC_002512.2 + 217793 0.68 0.79125
Target:  5'- gGCCGgcUGGCGGAucgGCGUcGCCGucccGAuCGUCGa -3'
miRNA:   3'- -CGGC--ACCGCCU---CGCA-CGGU----CU-GUAGC- -5'
9176 3' -58.6 NC_002512.2 + 222250 0.67 0.84597
Target:  5'- cGCCGUGGCGGGucucgugauggccuGCGcccUGCuCGGGCGc-- -3'
miRNA:   3'- -CGGCACCGCCU--------------CGC---ACG-GUCUGUagc -5'
9176 3' -58.6 NC_002512.2 + 224144 0.67 0.84825
Target:  5'- cGCCGggaGGCGGAcGCGUgagGCgGGGCGggggCGc -3'
miRNA:   3'- -CGGCa--CCGCCU-CGCA---CGgUCUGUa---GC- -5'
9176 3' -58.6 NC_002512.2 + 225730 0.66 0.889663
Target:  5'- aGCCGcGGCgacucgcucagucGGGGCGcgGCCgGGACAUgGg -3'
miRNA:   3'- -CGGCaCCG-------------CCUCGCa-CGG-UCUGUAgC- -5'
9176 3' -58.6 NC_002512.2 + 226844 0.68 0.79125
Target:  5'- cGCCGUcaaGGCGGAGCaGgccGCCAGGgAggccCGg -3'
miRNA:   3'- -CGGCA---CCGCCUCG-Ca--CGGUCUgUa---GC- -5'
9176 3' -58.6 NC_002512.2 + 227613 0.69 0.773688
Target:  5'- gGCCGgagGGCGGgcggcGGCGgcgagGUCAGGCGaCGg -3'
miRNA:   3'- -CGGCa--CCGCC-----UCGCa----CGGUCUGUaGC- -5'
9176 3' -58.6 NC_002512.2 + 228223 0.67 0.855734
Target:  5'- gGCCGggcgagacGGCGGgaagGGCGaacgUGCCGGACG-CGg -3'
miRNA:   3'- -CGGCa-------CCGCC----UCGC----ACGGUCUGUaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.