miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9176 3' -58.6 NC_002512.2 + 35494 1.1 0.002265
Target:  5'- uGCCGUGGCGGAGCGUGCCAGACAUCGa -3'
miRNA:   3'- -CGGCACCGCCUCGCACGGUCUGUAGC- -5'
9176 3' -58.6 NC_002512.2 + 75546 0.67 0.870146
Target:  5'- cGCCGUGGCGGAggacgacgacGCGgacgacuCCGGAUccCGg -3'
miRNA:   3'- -CGGCACCGCCU----------CGCac-----GGUCUGuaGC- -5'
9176 3' -58.6 NC_002512.2 + 92543 0.68 0.78253
Target:  5'- gGCCGcGGCGGccGCG-GCgAcGACGUCGg -3'
miRNA:   3'- -CGGCaCCGCCu-CGCaCGgU-CUGUAGC- -5'
9176 3' -58.6 NC_002512.2 + 101267 0.69 0.759306
Target:  5'- cGUCGUGG-GGAGCGUacacgggcagguacCCGGACGUCc -3'
miRNA:   3'- -CGGCACCgCCUCGCAc-------------GGUCUGUAGc -5'
9176 3' -58.6 NC_002512.2 + 115869 0.7 0.680277
Target:  5'- cGCCGaGGCGG-GCccGCCGGACGaCGa -3'
miRNA:   3'- -CGGCaCCGCCuCGcaCGGUCUGUaGC- -5'
9176 3' -58.6 NC_002512.2 + 119469 0.71 0.664796
Target:  5'- aUCGUGGCGGAGCa-GCCGcuguucguggugugcGACAUCu -3'
miRNA:   3'- cGGCACCGCCUCGcaCGGU---------------CUGUAGc -5'
9176 3' -58.6 NC_002512.2 + 121357 0.66 0.908618
Target:  5'- gGCCGUuggacGGCGGAGaggGCCGGAgAggagggCGa -3'
miRNA:   3'- -CGGCA-----CCGCCUCgcaCGGUCUgUa-----GC- -5'
9176 3' -58.6 NC_002512.2 + 123137 0.66 0.908618
Target:  5'- aGCCGgacGCGGAGCGccGCCGGGg---- -3'
miRNA:   3'- -CGGCac-CGCCUCGCa-CGGUCUguagc -5'
9176 3' -58.6 NC_002512.2 + 126730 0.69 0.764732
Target:  5'- cGCCG-GGCGcGGcGCGUGCCucuuggcccgAGACGccUCGg -3'
miRNA:   3'- -CGGCaCCGC-CU-CGCACGG----------UCUGU--AGC- -5'
9176 3' -58.6 NC_002512.2 + 127784 0.67 0.831963
Target:  5'- gGCCGaGGCcgcacagGGAGaCGUGCCGGAagaacUCGg -3'
miRNA:   3'- -CGGCaCCG-------CCUC-GCACGGUCUgu---AGC- -5'
9176 3' -58.6 NC_002512.2 + 133889 0.7 0.699495
Target:  5'- cGCC-UGGCGGucGCGgcGCCGGACGcCGa -3'
miRNA:   3'- -CGGcACCGCCu-CGCa-CGGUCUGUaGC- -5'
9176 3' -58.6 NC_002512.2 + 134538 0.67 0.840588
Target:  5'- cGCUGUGGCGacaGAGCGaGCUGGAgcugAUCGg -3'
miRNA:   3'- -CGGCACCGC---CUCGCaCGGUCUg---UAGC- -5'
9176 3' -58.6 NC_002512.2 + 139983 0.67 0.863034
Target:  5'- cCCGUGcCGGA-CGUcCCAGACAUCu -3'
miRNA:   3'- cGGCACcGCCUcGCAcGGUCUGUAGc -5'
9176 3' -58.6 NC_002512.2 + 143684 0.68 0.79984
Target:  5'- aGCCG-GGCGGGGU--GUCGGGCA-CGg -3'
miRNA:   3'- -CGGCaCCGCCUCGcaCGGUCUGUaGC- -5'
9176 3' -58.6 NC_002512.2 + 149515 0.69 0.764732
Target:  5'- gGCCGcGGcCGGAGCGgGCCGGcCAg-- -3'
miRNA:   3'- -CGGCaCC-GCCUCGCaCGGUCuGUagc -5'
9176 3' -58.6 NC_002512.2 + 153422 0.66 0.883786
Target:  5'- --gGUGGCGGAaugGCGgcaggccgGCCGGGCG-CGg -3'
miRNA:   3'- cggCACCGCCU---CGCa-------CGGUCUGUaGC- -5'
9176 3' -58.6 NC_002512.2 + 157150 0.69 0.727919
Target:  5'- cCCGgGGCGG-GCGgcggGCCGGGCggCGu -3'
miRNA:   3'- cGGCaCCGCCuCGCa---CGGUCUGuaGC- -5'
9176 3' -58.6 NC_002512.2 + 158985 0.66 0.896619
Target:  5'- gGCCacGGCGGGGCGgaggcggcgGCCccGGCGUCc -3'
miRNA:   3'- -CGGcaCCGCCUCGCa--------CGGu-CUGUAGc -5'
9176 3' -58.6 NC_002512.2 + 164253 0.69 0.737254
Target:  5'- cGCCGUGGCGGGGgcCGUcgggucgaucGCCucGGGCuUCGu -3'
miRNA:   3'- -CGGCACCGCCUC--GCA----------CGG--UCUGuAGC- -5'
9176 3' -58.6 NC_002512.2 + 165975 0.69 0.737254
Target:  5'- aGCUGcGGCGGGGCG-GUCGGuucuuCGUCa -3'
miRNA:   3'- -CGGCaCCGCCUCGCaCGGUCu----GUAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.