Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9176 | 3' | -58.6 | NC_002512.2 | + | 165975 | 0.69 | 0.737254 |
Target: 5'- aGCUGcGGCGGGGCG-GUCGGuucuuCGUCa -3' miRNA: 3'- -CGGCaCCGCCUCGCaCGGUCu----GUAGc -5' |
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9176 | 3' | -58.6 | NC_002512.2 | + | 193452 | 0.68 | 0.79125 |
Target: 5'- cGCCgGUGGCgGGAGCGgGCCcuccgGGACGa-- -3' miRNA: 3'- -CGG-CACCG-CCUCGCaCGG-----UCUGUagc -5' |
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9176 | 3' | -58.6 | NC_002512.2 | + | 92543 | 0.68 | 0.78253 |
Target: 5'- gGCCGcGGCGGccGCG-GCgAcGACGUCGg -3' miRNA: 3'- -CGGCaCCGCCu-CGCaCGgU-CUGUAGC- -5' |
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9176 | 3' | -58.6 | NC_002512.2 | + | 227613 | 0.69 | 0.773688 |
Target: 5'- gGCCGgagGGCGGgcggcGGCGgcgagGUCAGGCGaCGg -3' miRNA: 3'- -CGGCa--CCGCC-----UCGCa----CGGUCUGUaGC- -5' |
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9176 | 3' | -58.6 | NC_002512.2 | + | 126730 | 0.69 | 0.764732 |
Target: 5'- cGCCG-GGCGcGGcGCGUGCCucuuggcccgAGACGccUCGg -3' miRNA: 3'- -CGGCaCCGC-CU-CGCACGG----------UCUGU--AGC- -5' |
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9176 | 3' | -58.6 | NC_002512.2 | + | 149515 | 0.69 | 0.764732 |
Target: 5'- gGCCGcGGcCGGAGCGgGCCGGcCAg-- -3' miRNA: 3'- -CGGCaCC-GCCUCGCaCGGUCuGUagc -5' |
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9176 | 3' | -58.6 | NC_002512.2 | + | 101267 | 0.69 | 0.759306 |
Target: 5'- cGUCGUGG-GGAGCGUacacgggcagguacCCGGACGUCc -3' miRNA: 3'- -CGGCACCgCCUCGCAc-------------GGUCUGUAGc -5' |
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9176 | 3' | -58.6 | NC_002512.2 | + | 166462 | 0.69 | 0.737254 |
Target: 5'- cGCCGggcucgagGGCGGGGaCG-GCgGGACcgCGg -3' miRNA: 3'- -CGGCa-------CCGCCUC-GCaCGgUCUGuaGC- -5' |
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9176 | 3' | -58.6 | NC_002512.2 | + | 164253 | 0.69 | 0.737254 |
Target: 5'- cGCCGUGGCGGGGgcCGUcgggucgaucGCCucGGGCuUCGu -3' miRNA: 3'- -CGGCACCGCCUC--GCA----------CGG--UCUGuAGC- -5' |
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9176 | 3' | -58.6 | NC_002512.2 | + | 217793 | 0.68 | 0.79125 |
Target: 5'- gGCCGgcUGGCGGAucgGCGUcGCCGucccGAuCGUCGa -3' miRNA: 3'- -CGGC--ACCGCCU---CGCA-CGGU----CU-GUAGC- -5' |
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9176 | 3' | -58.6 | NC_002512.2 | + | 157150 | 0.69 | 0.727919 |
Target: 5'- cCCGgGGCGG-GCGgcggGCCGGGCggCGu -3' miRNA: 3'- cGGCaCCGCCuCGCa---CGGUCUGuaGC- -5' |
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9176 | 3' | -58.6 | NC_002512.2 | + | 133889 | 0.7 | 0.699495 |
Target: 5'- cGCC-UGGCGGucGCGgcGCCGGACGcCGa -3' miRNA: 3'- -CGGcACCGCCu-CGCa-CGGUCUGUaGC- -5' |
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9176 | 3' | -58.6 | NC_002512.2 | + | 115869 | 0.7 | 0.680277 |
Target: 5'- cGCCGaGGCGG-GCccGCCGGACGaCGa -3' miRNA: 3'- -CGGCaCCGCCuCGcaCGGUCUGUaGC- -5' |
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9176 | 3' | -58.6 | NC_002512.2 | + | 119469 | 0.71 | 0.664796 |
Target: 5'- aUCGUGGCGGAGCa-GCCGcuguucguggugugcGACAUCu -3' miRNA: 3'- cGGCACCGCCUCGcaCGGU---------------CUGUAGc -5' |
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9176 | 3' | -58.6 | NC_002512.2 | + | 191416 | 0.71 | 0.651198 |
Target: 5'- cGCCGUGGCGGccCGgGCgGGACAgUCa -3' miRNA: 3'- -CGGCACCGCCucGCaCGgUCUGU-AGc -5' |
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9176 | 3' | -58.6 | NC_002512.2 | + | 207771 | 0.71 | 0.631733 |
Target: 5'- cGCCGUGGUGGuugcgggacGGCGUcgucucccgGCCGGACGa-- -3' miRNA: 3'- -CGGCACCGCC---------UCGCA---------CGGUCUGUagc -5' |
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9176 | 3' | -58.6 | NC_002512.2 | + | 167730 | 0.74 | 0.462235 |
Target: 5'- cUCGUcGaGCGGGGCGaggagcUGCCGGGCGUCGg -3' miRNA: 3'- cGGCA-C-CGCCUCGC------ACGGUCUGUAGC- -5' |
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9176 | 3' | -58.6 | NC_002512.2 | + | 35494 | 1.1 | 0.002265 |
Target: 5'- uGCCGUGGCGGAGCGUGCCAGACAUCGa -3' miRNA: 3'- -CGGCACCGCCUCGCACGGUCUGUAGC- -5' |
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9176 | 3' | -58.6 | NC_002512.2 | + | 224144 | 0.67 | 0.84825 |
Target: 5'- cGCCGggaGGCGGAcGCGUgagGCgGGGCGggggCGc -3' miRNA: 3'- -CGGCa--CCGCCU-CGCA---CGgUCUGUa---GC- -5' |
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9176 | 3' | -58.6 | NC_002512.2 | + | 123137 | 0.66 | 0.908618 |
Target: 5'- aGCCGgacGCGGAGCGccGCCGGGg---- -3' miRNA: 3'- -CGGCac-CGCCUCGCa-CGGUCUguagc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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