miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9176 5' -53.1 NC_002512.2 + 92710 0.66 0.992985
Target:  5'- cGACGAcgCCg--UACGgACgUCCGGGGGg -3'
miRNA:   3'- -CUGCUa-GGaagAUGUgUG-AGGCCCUC- -5'
9176 5' -53.1 NC_002512.2 + 92479 0.66 0.991649
Target:  5'- aGACGAgCCggCUGCagcguuACACggacuuccuccgcuUCCGGGAGa -3'
miRNA:   3'- -CUGCUaGGaaGAUG------UGUG--------------AGGCCCUC- -5'
9176 5' -53.1 NC_002512.2 + 212945 0.66 0.989606
Target:  5'- -cCGGUCCgagUCgcccuacgGCGC-CUCCGGGGu -3'
miRNA:   3'- cuGCUAGGa--AGa-------UGUGuGAGGCCCUc -5'
9176 5' -53.1 NC_002512.2 + 229554 0.66 0.989606
Target:  5'- gGGCGGggcgCCggCggaggaGCGCGCgCCGGGAGg -3'
miRNA:   3'- -CUGCUa---GGaaGa-----UGUGUGaGGCCCUC- -5'
9176 5' -53.1 NC_002512.2 + 151 0.66 0.989606
Target:  5'- gGGCGGggcgCCggCggaggaGCGCGCgCCGGGAGg -3'
miRNA:   3'- -CUGCUa---GGaaGa-----UGUGUGaGGCCCUC- -5'
9176 5' -53.1 NC_002512.2 + 152215 0.66 0.988088
Target:  5'- -cCGGUCCUggccgguUCUAgACAUUUgGGGGGa -3'
miRNA:   3'- cuGCUAGGA-------AGAUgUGUGAGgCCCUC- -5'
9176 5' -53.1 NC_002512.2 + 206786 0.67 0.986724
Target:  5'- cGCGAUCa-UCcGCACgccgaACUCCGGGAu -3'
miRNA:   3'- cUGCUAGgaAGaUGUG-----UGAGGCCCUc -5'
9176 5' -53.1 NC_002512.2 + 186646 0.67 0.98507
Target:  5'- cGCGggCCa-CUGgGCccaGCUCCGGGAGg -3'
miRNA:   3'- cUGCuaGGaaGAUgUG---UGAGGCCCUC- -5'
9176 5' -53.1 NC_002512.2 + 228079 0.67 0.98507
Target:  5'- aGACGAcggg-CUGCACACggUCGGGAGc -3'
miRNA:   3'- -CUGCUaggaaGAUGUGUGa-GGCCCUC- -5'
9176 5' -53.1 NC_002512.2 + 88493 0.67 0.983264
Target:  5'- gGugGAUCCgca-GC-CGCUCCGGGuGc -3'
miRNA:   3'- -CugCUAGGaagaUGuGUGAGGCCCuC- -5'
9176 5' -53.1 NC_002512.2 + 123465 0.67 0.983264
Target:  5'- aGACGGaccCCUUCUACuucaccuucCugUCgCGGGAGa -3'
miRNA:   3'- -CUGCUa--GGAAGAUGu--------GugAG-GCCCUC- -5'
9176 5' -53.1 NC_002512.2 + 173434 0.67 0.979163
Target:  5'- cGCGcgCCUcgUCU-CGCACUCgGGGGa -3'
miRNA:   3'- cUGCuaGGA--AGAuGUGUGAGgCCCUc -5'
9176 5' -53.1 NC_002512.2 + 147026 0.67 0.979163
Target:  5'- aGACGGucaacgucuUCCUggacCUGCGCGCggaCCGGGGc -3'
miRNA:   3'- -CUGCU---------AGGAa---GAUGUGUGa--GGCCCUc -5'
9176 5' -53.1 NC_002512.2 + 227444 0.67 0.976853
Target:  5'- cGCGGUCac-CUuCGCGCUgCCGGGGGa -3'
miRNA:   3'- cUGCUAGgaaGAuGUGUGA-GGCCCUC- -5'
9176 5' -53.1 NC_002512.2 + 5989 0.68 0.968798
Target:  5'- -cCGAUCCgcgCU-CACcuguACUCUGGGAGa -3'
miRNA:   3'- cuGCUAGGaa-GAuGUG----UGAGGCCCUC- -5'
9176 5' -53.1 NC_002512.2 + 28058 0.68 0.965716
Target:  5'- cGAUGGucauUCCUaCUugACAUUCUGGGAc -3'
miRNA:   3'- -CUGCU----AGGAaGAugUGUGAGGCCCUc -5'
9176 5' -53.1 NC_002512.2 + 128995 0.68 0.962427
Target:  5'- uGCGuUUCUUCaacGCGCACUggggCCGGGAGg -3'
miRNA:   3'- cUGCuAGGAAGa--UGUGUGA----GGCCCUC- -5'
9176 5' -53.1 NC_002512.2 + 126371 0.69 0.951261
Target:  5'- cACGGUCC-UCUgGC-CGC-CCGGGAGa -3'
miRNA:   3'- cUGCUAGGaAGA-UGuGUGaGGCCCUC- -5'
9176 5' -53.1 NC_002512.2 + 146628 0.69 0.951261
Target:  5'- cGACGAUCCgccagCUGCugGCggcgaCGaGGAGg -3'
miRNA:   3'- -CUGCUAGGaa---GAUGugUGag---GC-CCUC- -5'
9176 5' -53.1 NC_002512.2 + 98066 0.7 0.933206
Target:  5'- cGACGAUCCgcacucucuucUUCUGCGCG-UUCGGGGu -3'
miRNA:   3'- -CUGCUAGG-----------AAGAUGUGUgAGGCCCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.