miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9178 3' -61.1 NC_002512.2 + 34334 1.08 0.001701
Target:  5'- gAGGGGCCACCACACACGGCCGCUACAa -3'
miRNA:   3'- -UCCCCGGUGGUGUGUGCCGGCGAUGU- -5'
9178 3' -61.1 NC_002512.2 + 144821 0.76 0.252191
Target:  5'- cGGGGGCCACgaGgGCACGGC-GCUGCu -3'
miRNA:   3'- -UCCCCGGUGg-UgUGUGCCGgCGAUGu -5'
9178 3' -61.1 NC_002512.2 + 224629 0.76 0.263864
Target:  5'- cGGGGUCGCCGC-CGCGGCCucggcCUACGc -3'
miRNA:   3'- uCCCCGGUGGUGuGUGCCGGc----GAUGU- -5'
9178 3' -61.1 NC_002512.2 + 129200 0.75 0.294957
Target:  5'- gAGGaGGCCGCCGC-CGCuGGCCGCg--- -3'
miRNA:   3'- -UCC-CCGGUGGUGuGUG-CCGGCGaugu -5'
9178 3' -61.1 NC_002512.2 + 136451 0.73 0.357938
Target:  5'- cGGGGCCACUACAUcCGcGCCGagUACGa -3'
miRNA:   3'- uCCCCGGUGGUGUGuGC-CGGCg-AUGU- -5'
9178 3' -61.1 NC_002512.2 + 146724 0.73 0.388804
Target:  5'- cGGGGCgGCgGC-CGCGGCCGCcggGCc -3'
miRNA:   3'- uCCCCGgUGgUGuGUGCCGGCGa--UGu -5'
9178 3' -61.1 NC_002512.2 + 147933 0.73 0.396789
Target:  5'- cGGGGCuCACCGCGCGCcGGCCcCUcCGc -3'
miRNA:   3'- uCCCCG-GUGGUGUGUG-CCGGcGAuGU- -5'
9178 3' -61.1 NC_002512.2 + 147186 0.72 0.421366
Target:  5'- -cGGGCCcgcGCCGCGCACGGaCGCcgACAg -3'
miRNA:   3'- ucCCCGG---UGGUGUGUGCCgGCGa-UGU- -5'
9178 3' -61.1 NC_002512.2 + 148519 0.72 0.421366
Target:  5'- gAGGcGGCCGCCGCcCGCcccGGCCGCg--- -3'
miRNA:   3'- -UCC-CCGGUGGUGuGUG---CCGGCGaugu -5'
9178 3' -61.1 NC_002512.2 + 206068 0.72 0.421366
Target:  5'- aGGGuGGCCACCugGgugcCGCGGUgcaGCUGCAg -3'
miRNA:   3'- -UCC-CCGGUGGugU----GUGCCGg--CGAUGU- -5'
9178 3' -61.1 NC_002512.2 + 124321 0.72 0.42976
Target:  5'- cGGGGCCGCgGCGgACGuGCUGCgGCu -3'
miRNA:   3'- uCCCCGGUGgUGUgUGC-CGGCGaUGu -5'
9178 3' -61.1 NC_002512.2 + 211997 0.72 0.433145
Target:  5'- cGGGGCCGCCGC-CGCcuaucacgucccccgGGCC-CUGCGc -3'
miRNA:   3'- uCCCCGGUGGUGuGUG---------------CCGGcGAUGU- -5'
9178 3' -61.1 NC_002512.2 + 149009 0.71 0.491107
Target:  5'- gGGGGGCCGCCGCGgACcGCC-CgACAc -3'
miRNA:   3'- -UCCCCGGUGGUGUgUGcCGGcGaUGU- -5'
9178 3' -61.1 NC_002512.2 + 175259 0.71 0.498381
Target:  5'- -aGGGCCGCgcucggcggguaGCugGCGGCCGCgUACAc -3'
miRNA:   3'- ucCCCGGUGg-----------UGugUGCCGGCG-AUGU- -5'
9178 3' -61.1 NC_002512.2 + 202296 0.7 0.527933
Target:  5'- cGGGGcgccguGCCGCCGCGcuuUugGGCCGCUcCGc -3'
miRNA:   3'- -UCCC------CGGUGGUGU---GugCCGGCGAuGU- -5'
9178 3' -61.1 NC_002512.2 + 185347 0.7 0.534486
Target:  5'- cGGGuGGCCGCCGCcaucgccgucgacuGCgacaccuucgGCGGCgGCUGCGa -3'
miRNA:   3'- -UCC-CCGGUGGUG--------------UG----------UGCCGgCGAUGU- -5'
9178 3' -61.1 NC_002512.2 + 150069 0.7 0.54673
Target:  5'- gGGGGGaCCGCCGC-CGCcGCCGUcggGCGa -3'
miRNA:   3'- -UCCCC-GGUGGUGuGUGcCGGCGa--UGU- -5'
9178 3' -61.1 NC_002512.2 + 96201 0.7 0.54673
Target:  5'- gAGGcGGCCgcgaggucgGCCACG-GCGGCCGCgGCGg -3'
miRNA:   3'- -UCC-CCGG---------UGGUGUgUGCCGGCGaUGU- -5'
9178 3' -61.1 NC_002512.2 + 224715 0.7 0.54673
Target:  5'- uGGGGCCgGCCGcCGCcccgguCGcGCCGCUGCc -3'
miRNA:   3'- uCCCCGG-UGGU-GUGu-----GC-CGGCGAUGu -5'
9178 3' -61.1 NC_002512.2 + 99731 0.7 0.555259
Target:  5'- cGGGccggcccGCCGCCGgGCcccGCGGCCGCgACAc -3'
miRNA:   3'- uCCC-------CGGUGGUgUG---UGCCGGCGaUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.