miRNA display CGI


Results 1 - 20 of 95 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9178 3' -61.1 NC_002512.2 + 293 0.67 0.690226
Target:  5'- gGGGGGCCAgggcagcCCACGCccucCGGCCuccuCUGCc -3'
miRNA:   3'- -UCCCCGGU-------GGUGUGu---GCCGGc---GAUGu -5'
9178 3' -61.1 NC_002512.2 + 34334 1.08 0.001701
Target:  5'- gAGGGGCCACCACACACGGCCGCUACAa -3'
miRNA:   3'- -UCCCCGGUGGUGUGUGCCGGCGAUGU- -5'
9178 3' -61.1 NC_002512.2 + 37741 0.67 0.719644
Target:  5'- aAGGcGGUCACgACG-ACGGCCGCa--- -3'
miRNA:   3'- -UCC-CCGGUGgUGUgUGCCGGCGaugu -5'
9178 3' -61.1 NC_002512.2 + 41456 0.69 0.575303
Target:  5'- gAGaGGGCCGCgAgAC-UGGCCGCUuuACAg -3'
miRNA:   3'- -UC-CCCGGUGgUgUGuGCCGGCGA--UGU- -5'
9178 3' -61.1 NC_002512.2 + 76445 0.66 0.765629
Target:  5'- -cGGGCCAggUCuCGgaACGGCCGCUGCc -3'
miRNA:   3'- ucCCCGGU--GGuGUg-UGCCGGCGAUGu -5'
9178 3' -61.1 NC_002512.2 + 91543 0.66 0.774537
Target:  5'- gAGGaGGaCCACCugGCGCugaccacGCCGCUcucGCGg -3'
miRNA:   3'- -UCC-CC-GGUGGugUGUGc------CGGCGA---UGU- -5'
9178 3' -61.1 NC_002512.2 + 91888 0.68 0.642963
Target:  5'- cGGGcGGCggCGCgGCGCACGGcCCGCU-CGg -3'
miRNA:   3'- -UCC-CCG--GUGgUGUGUGCC-GGCGAuGU- -5'
9178 3' -61.1 NC_002512.2 + 92083 0.69 0.623571
Target:  5'- cGGacGGCCGCCggACGCGCGGcCCGCcgaGCGc -3'
miRNA:   3'- uCC--CCGGUGG--UGUGUGCC-GGCGa--UGU- -5'
9178 3' -61.1 NC_002512.2 + 95751 0.66 0.765629
Target:  5'- cGGGacGCgCGCCGCG-ACGGCCGCcuggACGg -3'
miRNA:   3'- uCCC--CG-GUGGUGUgUGCCGGCGa---UGU- -5'
9178 3' -61.1 NC_002512.2 + 96201 0.7 0.54673
Target:  5'- gAGGcGGCCgcgaggucgGCCACG-GCGGCCGCgGCGg -3'
miRNA:   3'- -UCC-CCGG---------UGGUGUgUGCCGGCGaUGU- -5'
9178 3' -61.1 NC_002512.2 + 99114 0.69 0.594543
Target:  5'- -cGGGCCGCUccaagagaucGCGCACGGCCGg---- -3'
miRNA:   3'- ucCCCGGUGG----------UGUGUGCCGGCgaugu -5'
9178 3' -61.1 NC_002512.2 + 99731 0.7 0.555259
Target:  5'- cGGGccggcccGCCGCCGgGCcccGCGGCCGCgACAc -3'
miRNA:   3'- uCCC-------CGGUGGUgUG---UGCCGGCGaUGU- -5'
9178 3' -61.1 NC_002512.2 + 103713 0.68 0.658456
Target:  5'- gGGGGcGCCGCCAUGauccugaaccggacCGCGGCgauccugaagaggCGCUACGa -3'
miRNA:   3'- -UCCC-CGGUGGUGU--------------GUGCCG-------------GCGAUGU- -5'
9178 3' -61.1 NC_002512.2 + 104747 0.67 0.729007
Target:  5'- cGGGGCCcCCGCGguuCACGcG-UGCUGCAu -3'
miRNA:   3'- uCCCCGGuGGUGU---GUGC-CgGCGAUGU- -5'
9178 3' -61.1 NC_002512.2 + 106746 0.67 0.738295
Target:  5'- cGGcGCCGCCGCcccgucccccgGgACGGCCGCcgACGg -3'
miRNA:   3'- uCCcCGGUGGUG-----------UgUGCCGGCGa-UGU- -5'
9178 3' -61.1 NC_002512.2 + 110696 0.66 0.765629
Target:  5'- ---aGCCGCCGCAgggcCAgGGCCaGCUGCAu -3'
miRNA:   3'- ucccCGGUGGUGU----GUgCCGG-CGAUGU- -5'
9178 3' -61.1 NC_002512.2 + 116955 0.66 0.774537
Target:  5'- cGGGGcGCCAuCCGCA-ACGaGCUGCUGa- -3'
miRNA:   3'- -UCCC-CGGU-GGUGUgUGC-CGGCGAUgu -5'
9178 3' -61.1 NC_002512.2 + 117892 0.68 0.681597
Target:  5'- cGGGGGCCcgucGCUGCucCACGGCCaGC-GCGc -3'
miRNA:   3'- -UCCCCGG----UGGUGu-GUGCCGG-CGaUGU- -5'
9178 3' -61.1 NC_002512.2 + 119345 0.66 0.783332
Target:  5'- cGGGGGCggaaaCGCCGguCACGGCgacuCGCUcGCGg -3'
miRNA:   3'- -UCCCCG-----GUGGUguGUGCCG----GCGA-UGU- -5'
9178 3' -61.1 NC_002512.2 + 119973 0.67 0.738295
Target:  5'- uGGGGCCgaaCGCGCGCGacGCCGaCgaggGCAa -3'
miRNA:   3'- uCCCCGGug-GUGUGUGC--CGGC-Ga---UGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.