miRNA display CGI


Results 1 - 20 of 46 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9178 5' -57.9 NC_002512.2 + 34371 1.06 0.003718
Target:  5'- uGACACAGCAGCUGGCAAUGGCCGCGUu -3'
miRNA:   3'- -CUGUGUCGUCGACCGUUACCGGCGCA- -5'
9178 5' -57.9 NC_002512.2 + 179233 0.8 0.214406
Target:  5'- uGCGcCAGCAGCUGGCg--GGCCGUGUc -3'
miRNA:   3'- cUGU-GUCGUCGACCGuuaCCGGCGCA- -5'
9178 5' -57.9 NC_002512.2 + 156503 0.75 0.395775
Target:  5'- gGACACGGCGGCcugGGCGGcgGGgCGCGg -3'
miRNA:   3'- -CUGUGUCGUCGa--CCGUUa-CCgGCGCa -5'
9178 5' -57.9 NC_002512.2 + 182615 0.74 0.447522
Target:  5'- -cCGCAGCGGCU--CGGUGGCCGCGc -3'
miRNA:   3'- cuGUGUCGUCGAccGUUACCGGCGCa -5'
9178 5' -57.9 NC_002512.2 + 175264 0.73 0.521906
Target:  5'- cGCGCucggcgGGUAGCUGGC---GGCCGCGUa -3'
miRNA:   3'- cUGUG------UCGUCGACCGuuaCCGGCGCA- -5'
9178 5' -57.9 NC_002512.2 + 198664 0.72 0.531558
Target:  5'- aACGCAGCAGCgUGGCGAcggggGGCC-CGa -3'
miRNA:   3'- cUGUGUCGUCG-ACCGUUa----CCGGcGCa -5'
9178 5' -57.9 NC_002512.2 + 126770 0.72 0.531558
Target:  5'- gGGCGCGGCGGCggcGGCGAcgcGuGCCGCGc -3'
miRNA:   3'- -CUGUGUCGUCGa--CCGUUa--C-CGGCGCa -5'
9178 5' -57.9 NC_002512.2 + 170821 0.72 0.570751
Target:  5'- gGGgGCGGCAGCggcGGCAGcGGCgGCGa -3'
miRNA:   3'- -CUgUGUCGUCGa--CCGUUaCCGgCGCa -5'
9178 5' -57.9 NC_002512.2 + 103469 0.72 0.570751
Target:  5'- gGACGCGGCucgGGuCUcGGCGGcGGCCGCGg -3'
miRNA:   3'- -CUGUGUCG---UC-GA-CCGUUaCCGGCGCa -5'
9178 5' -57.9 NC_002512.2 + 185197 0.72 0.570751
Target:  5'- aACGCGGCGGCggucgacgccGCGGUGGCcCGCGUc -3'
miRNA:   3'- cUGUGUCGUCGac--------CGUUACCG-GCGCA- -5'
9178 5' -57.9 NC_002512.2 + 225030 0.72 0.580668
Target:  5'- cGCAC-GCGGCgaaccccGCGAUGGCCGCGc -3'
miRNA:   3'- cUGUGuCGUCGac-----CGUUACCGGCGCa -5'
9178 5' -57.9 NC_002512.2 + 181051 0.71 0.600601
Target:  5'- -cCGCA-CAGCcGGCAGUGcGCCGCGa -3'
miRNA:   3'- cuGUGUcGUCGaCCGUUAC-CGGCGCa -5'
9178 5' -57.9 NC_002512.2 + 117112 0.71 0.610605
Target:  5'- cGGCACAGCGGCacggGGCcccGUcGGCgGCGUu -3'
miRNA:   3'- -CUGUGUCGUCGa---CCGu--UA-CCGgCGCA- -5'
9178 5' -57.9 NC_002512.2 + 96996 0.71 0.630651
Target:  5'- gGACGCcacGCAGCUGGUGAUGuaCGUGa -3'
miRNA:   3'- -CUGUGu--CGUCGACCGUUACcgGCGCa -5'
9178 5' -57.9 NC_002512.2 + 101425 0.7 0.66071
Target:  5'- gGGCACAGCGGC-GGCc--GGCgGCGc -3'
miRNA:   3'- -CUGUGUCGUCGaCCGuuaCCGgCGCa -5'
9178 5' -57.9 NC_002512.2 + 153375 0.7 0.690569
Target:  5'- --gGCGGCGGCUGGCGguccggagcgacGUGGagCGCGg -3'
miRNA:   3'- cugUGUCGUCGACCGU------------UACCg-GCGCa -5'
9178 5' -57.9 NC_002512.2 + 89466 0.69 0.70044
Target:  5'- -uCGCAGUAGCgGGCGAaGGCCuCGUu -3'
miRNA:   3'- cuGUGUCGUCGaCCGUUaCCGGcGCA- -5'
9178 5' -57.9 NC_002512.2 + 211762 0.69 0.70044
Target:  5'- gGGCGCuGCGGgaGGaCGuggaggcccggGUGGCCGCGg -3'
miRNA:   3'- -CUGUGuCGUCgaCC-GU-----------UACCGGCGCa -5'
9178 5' -57.9 NC_002512.2 + 146715 0.69 0.710255
Target:  5'- aGACgACGGCGG--GGCGGcGGCCGCGg -3'
miRNA:   3'- -CUG-UGUCGUCgaCCGUUaCCGGCGCa -5'
9178 5' -57.9 NC_002512.2 + 189888 0.69 0.720007
Target:  5'- gGAgACGGCGGC-GGCGAggacGGCgGCGa -3'
miRNA:   3'- -CUgUGUCGUCGaCCGUUa---CCGgCGCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.