miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9178 5' -57.9 NC_002512.2 + 34371 1.06 0.003718
Target:  5'- uGACACAGCAGCUGGCAAUGGCCGCGUu -3'
miRNA:   3'- -CUGUGUCGUCGACCGUUACCGGCGCA- -5'
9178 5' -57.9 NC_002512.2 + 44508 0.69 0.748794
Target:  5'- aACGCAGCAccGgUGGC-AUGGaCCGCGc -3'
miRNA:   3'- cUGUGUCGU--CgACCGuUACC-GGCGCa -5'
9178 5' -57.9 NC_002512.2 + 74644 0.67 0.852825
Target:  5'- cGACGCcGCGaCgGGCGGgacGGCCGCGg -3'
miRNA:   3'- -CUGUGuCGUcGaCCGUUa--CCGGCGCa -5'
9178 5' -57.9 NC_002512.2 + 89466 0.69 0.70044
Target:  5'- -uCGCAGUAGCgGGCGAaGGCCuCGUu -3'
miRNA:   3'- cuGUGUCGUCGaCCGUUaCCGGcGCA- -5'
9178 5' -57.9 NC_002512.2 + 92578 0.67 0.828925
Target:  5'- cGACGCcGCGGCcGGgAggGGCgGCGg -3'
miRNA:   3'- -CUGUGuCGUCGaCCgUuaCCGgCGCa -5'
9178 5' -57.9 NC_002512.2 + 94407 0.68 0.767508
Target:  5'- --gACGGCGGUcuUGGCGcuccaGUcGGCCGCGUc -3'
miRNA:   3'- cugUGUCGUCG--ACCGU-----UA-CCGGCGCA- -5'
9178 5' -57.9 NC_002512.2 + 96220 0.69 0.748794
Target:  5'- -cCACGGCGGCcgcGGCGGcGGCgGCGa -3'
miRNA:   3'- cuGUGUCGUCGa--CCGUUaCCGgCGCa -5'
9178 5' -57.9 NC_002512.2 + 96996 0.71 0.630651
Target:  5'- gGACGCcacGCAGCUGGUGAUGuaCGUGa -3'
miRNA:   3'- -CUGUGu--CGUCGACCGUUACcgGCGCa -5'
9178 5' -57.9 NC_002512.2 + 99511 0.67 0.852825
Target:  5'- --gACGG-GGUUGGCGGccUGGCCGCGc -3'
miRNA:   3'- cugUGUCgUCGACCGUU--ACCGGCGCa -5'
9178 5' -57.9 NC_002512.2 + 101425 0.7 0.66071
Target:  5'- gGGCACAGCGGC-GGCc--GGCgGCGc -3'
miRNA:   3'- -CUGUGUCGUCGaCCGuuaCCGgCGCa -5'
9178 5' -57.9 NC_002512.2 + 103469 0.72 0.570751
Target:  5'- gGACGCGGCucgGGuCUcGGCGGcGGCCGCGg -3'
miRNA:   3'- -CUGUGUCG---UC-GA-CCGUUaCCGGCGCa -5'
9178 5' -57.9 NC_002512.2 + 110720 0.68 0.776696
Target:  5'- uGCAUGGC-GUUGGCcagGGCCGUGUu -3'
miRNA:   3'- cUGUGUCGuCGACCGuuaCCGGCGCA- -5'
9178 5' -57.9 NC_002512.2 + 116537 0.66 0.874999
Target:  5'- aGACGugcCAGCuGCUGGgGAUgaacGGCCGCc- -3'
miRNA:   3'- -CUGU---GUCGuCGACCgUUA----CCGGCGca -5'
9178 5' -57.9 NC_002512.2 + 117112 0.71 0.610605
Target:  5'- cGGCACAGCGGCacggGGCcccGUcGGCgGCGUu -3'
miRNA:   3'- -CUGUGUCGUCGa---CCGu--UA-CCGgCGCA- -5'
9178 5' -57.9 NC_002512.2 + 122050 0.66 0.858159
Target:  5'- aGAUcCuGCGGCUGGCGgugagcaggcugaaGUGGCUGCc- -3'
miRNA:   3'- -CUGuGuCGUCGACCGU--------------UACCGGCGca -5'
9178 5' -57.9 NC_002512.2 + 126770 0.72 0.531558
Target:  5'- gGGCGCGGCGGCggcGGCGAcgcGuGCCGCGc -3'
miRNA:   3'- -CUGUGUCGUCGa--CCGUUa--C-CGGCGCa -5'
9178 5' -57.9 NC_002512.2 + 130799 0.69 0.748794
Target:  5'- cGACGC-GCAGCacGCGGUGGCCGagGUu -3'
miRNA:   3'- -CUGUGuCGUCGacCGUUACCGGCg-CA- -5'
9178 5' -57.9 NC_002512.2 + 131370 0.66 0.888749
Target:  5'- cGGCGCGGUGGCUcucGCAGUaGGCCaGCa- -3'
miRNA:   3'- -CUGUGUCGUCGAc--CGUUA-CCGG-CGca -5'
9178 5' -57.9 NC_002512.2 + 146715 0.69 0.710255
Target:  5'- aGACgACGGCGG--GGCGGcGGCCGCGg -3'
miRNA:   3'- -CUG-UGUCGUCgaCCGUUaCCGGCGCa -5'
9178 5' -57.9 NC_002512.2 + 146897 0.67 0.852825
Target:  5'- aGGCGCAGCuGgaGGC---GGCCGaCGUc -3'
miRNA:   3'- -CUGUGUCGuCgaCCGuuaCCGGC-GCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.