miRNA display CGI


Results 1 - 20 of 171 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9179 3' -53.3 NC_002512.2 + 7934 0.72 0.843646
Target:  5'- uCCGGUuucguuGCGGCCGGGc-GGAugAUCUCg -3'
miRNA:   3'- -GGCCG------CGCCGGUUUaaCCUugUAGGG- -5'
9179 3' -53.3 NC_002512.2 + 33081 0.69 0.947694
Target:  5'- aCCGGCgcgcGCGGUCAucg-GGAccAUAUCUCg -3'
miRNA:   3'- -GGCCG----CGCCGGUuuaaCCU--UGUAGGG- -5'
9179 3' -53.3 NC_002512.2 + 33736 0.72 0.880786
Target:  5'- uCCGGaCGcCGGUgAAAUUGGAAgAUgaaCCCa -3'
miRNA:   3'- -GGCC-GC-GCCGgUUUAACCUUgUA---GGG- -5'
9179 3' -53.3 NC_002512.2 + 34088 1.14 0.00458
Target:  5'- aCCGGCGCGGCCAAAUUGGAACAUCCCc -3'
miRNA:   3'- -GGCCGCGCCGGUUUAACCUUGUAGGG- -5'
9179 3' -53.3 NC_002512.2 + 54173 0.67 0.979269
Target:  5'- aCGaGCGgGGUCAGcccGGGuccACGUCCCg -3'
miRNA:   3'- gGC-CGCgCCGGUUuaaCCU---UGUAGGG- -5'
9179 3' -53.3 NC_002512.2 + 54367 0.67 0.979269
Target:  5'- aCGaGCGgGGUCAGcccGGGuccACGUCCCg -3'
miRNA:   3'- gGC-CGCgCCGGUUuaaCCU---UGUAGGG- -5'
9179 3' -53.3 NC_002512.2 + 74731 0.66 0.99083
Target:  5'- cUCGGUGCGGUUAAA---GAACAccggcuuguUCCCc -3'
miRNA:   3'- -GGCCGCGCCGGUUUaacCUUGU---------AGGG- -5'
9179 3' -53.3 NC_002512.2 + 74818 0.68 0.971057
Target:  5'- cCCGGCaGCGGCgGcggacgaacaacucGGUUcgaGGGGCcUCCCg -3'
miRNA:   3'- -GGCCG-CGCCGgU--------------UUAA---CCUUGuAGGG- -5'
9179 3' -53.3 NC_002512.2 + 75246 0.68 0.969051
Target:  5'- aCGaGCGCGGCC--------GCGUCCCg -3'
miRNA:   3'- gGC-CGCGCCGGuuuaaccuUGUAGGG- -5'
9179 3' -53.3 NC_002512.2 + 75921 0.69 0.951793
Target:  5'- gCCGGCGCcGCCGGAccccGAagaacccgACGUCCCc -3'
miRNA:   3'- -GGCCGCGcCGGUUUaac-CU--------UGUAGGG- -5'
9179 3' -53.3 NC_002512.2 + 76580 0.69 0.94337
Target:  5'- aCCGGCGCGucgagaugaacGCCGGcgUcGGACGUCUg -3'
miRNA:   3'- -GGCCGCGC-----------CGGUUuaAcCUUGUAGGg -5'
9179 3' -53.3 NC_002512.2 + 77699 0.72 0.873763
Target:  5'- uCCGGaCGCGGUCAAGUgaacGAgacGCcgCCCa -3'
miRNA:   3'- -GGCC-GCGCCGGUUUAac--CU---UGuaGGG- -5'
9179 3' -53.3 NC_002512.2 + 87624 0.66 0.989201
Target:  5'- cCCGGCcCGGacgacgaccggaucCCAGAUcGGAG-AUCCCg -3'
miRNA:   3'- -GGCCGcGCC--------------GGUUUAaCCUUgUAGGG- -5'
9179 3' -53.3 NC_002512.2 + 88129 0.77 0.598649
Target:  5'- aCGGCGCGGCgGAuguagGGGACGauccgCCCg -3'
miRNA:   3'- gGCCGCGCCGgUUuaa--CCUUGUa----GGG- -5'
9179 3' -53.3 NC_002512.2 + 91881 0.69 0.962778
Target:  5'- uCCGGCGCGGgCGGcggcgcGGcGCAcggCCCg -3'
miRNA:   3'- -GGCCGCGCCgGUUuaa---CCuUGUa--GGG- -5'
9179 3' -53.3 NC_002512.2 + 92580 0.7 0.918333
Target:  5'- aCGcCGCGGCCGGGagGGGcgGCgGUCCCg -3'
miRNA:   3'- gGCcGCGCCGGUUUaaCCU--UG-UAGGG- -5'
9179 3' -53.3 NC_002512.2 + 92642 0.66 0.991946
Target:  5'- gCCGGCGCcgggacccGCgCGGAUccGGGACGgccgCCCg -3'
miRNA:   3'- -GGCCGCGc-------CG-GUUUAa-CCUUGUa---GGG- -5'
9179 3' -53.3 NC_002512.2 + 94281 0.66 0.989596
Target:  5'- gCUGGCGUccacGGCCGg---GGAGCGgucgUCCa -3'
miRNA:   3'- -GGCCGCG----CCGGUuuaaCCUUGUa---GGG- -5'
9179 3' -53.3 NC_002512.2 + 94560 0.76 0.68473
Target:  5'- cCCGGCGCGGCUGAcgccgaccucgGGGACcgCCg -3'
miRNA:   3'- -GGCCGCGCCGGUUuaa--------CCUUGuaGGg -5'
9179 3' -53.3 NC_002512.2 + 95149 0.73 0.827454
Target:  5'- cCCGGCG-GGUCGAGgaccGGAGCcuUCCCc -3'
miRNA:   3'- -GGCCGCgCCGGUUUaa--CCUUGu-AGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.