miRNA display CGI


Results 1 - 20 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9179 3' -53.3 NC_002512.2 + 34088 1.14 0.00458
Target:  5'- aCCGGCGCGGCCAAAUUGGAACAUCCCc -3'
miRNA:   3'- -GGCCGCGCCGGUUUAACCUUGUAGGG- -5'
9179 3' -53.3 NC_002512.2 + 145522 0.78 0.539328
Target:  5'- uCCGGCucuGCGcGUCGGGccGGAGCAUCCCg -3'
miRNA:   3'- -GGCCG---CGC-CGGUUUaaCCUUGUAGGG- -5'
9179 3' -53.3 NC_002512.2 + 165326 0.78 0.578713
Target:  5'- gCGGCuaCGGCCug---GGGACAUCCCg -3'
miRNA:   3'- gGCCGc-GCCGGuuuaaCCUUGUAGGG- -5'
9179 3' -53.3 NC_002512.2 + 88129 0.77 0.598649
Target:  5'- aCGGCGCGGCgGAuguagGGGACGauccgCCCg -3'
miRNA:   3'- gGCCGCGCCGgUUuaa--CCUUGUa----GGG- -5'
9179 3' -53.3 NC_002512.2 + 176935 0.77 0.628713
Target:  5'- uCCGGCGCGccgacGCCGAcucGUucUGGAuguCGUCCCg -3'
miRNA:   3'- -GGCCGCGC-----CGGUU---UA--ACCUu--GUAGGG- -5'
9179 3' -53.3 NC_002512.2 + 171852 0.77 0.638749
Target:  5'- uCCGGcCGCGGCCGGGagGGGGCGgaacgCCg -3'
miRNA:   3'- -GGCC-GCGCCGGUUUaaCCUUGUa----GGg -5'
9179 3' -53.3 NC_002512.2 + 94560 0.76 0.68473
Target:  5'- cCCGGCGCGGCUGAcgccgaccucgGGGACcgCCg -3'
miRNA:   3'- -GGCCGCGCCGGUUuaa--------CCUUGuaGGg -5'
9179 3' -53.3 NC_002512.2 + 203121 0.76 0.688698
Target:  5'- -gGGCGuCGGCCGAGUcgUGGGcCAUCaCCg -3'
miRNA:   3'- ggCCGC-GCCGGUUUA--ACCUuGUAG-GG- -5'
9179 3' -53.3 NC_002512.2 + 225753 0.75 0.708419
Target:  5'- -gGGCGCGGCCGGGacaUGGGAUccaucuguUCCCg -3'
miRNA:   3'- ggCCGCGCCGGUUUa--ACCUUGu-------AGGG- -5'
9179 3' -53.3 NC_002512.2 + 184976 0.75 0.708419
Target:  5'- uCCGccGCGCGGCCGucgAcgUGGAGCGcugcggCCCg -3'
miRNA:   3'- -GGC--CGCGCCGGU---UuaACCUUGUa-----GGG- -5'
9179 3' -53.3 NC_002512.2 + 132580 0.74 0.756481
Target:  5'- gCgGGCGCGGCCAGGgguucgGcGAGCAgacgcucggccUCCCc -3'
miRNA:   3'- -GgCCGCGCCGGUUUaa----C-CUUGU-----------AGGG- -5'
9179 3' -53.3 NC_002512.2 + 211552 0.74 0.775028
Target:  5'- uUCGGCGUGuGCCGc---GGGAUGUCCCc -3'
miRNA:   3'- -GGCCGCGC-CGGUuuaaCCUUGUAGGG- -5'
9179 3' -53.3 NC_002512.2 + 211786 0.73 0.801905
Target:  5'- cCCGG-GUGGCCGcg--GGGGCcGUCCCg -3'
miRNA:   3'- -GGCCgCGCCGGUuuaaCCUUG-UAGGG- -5'
9179 3' -53.3 NC_002512.2 + 99274 0.73 0.807993
Target:  5'- gCCGGaCGCggggucgagcaggaGGCCGAcGUUGGAACccgCCCg -3'
miRNA:   3'- -GGCC-GCG--------------CCGGUU-UAACCUUGua-GGG- -5'
9179 3' -53.3 NC_002512.2 + 209032 0.73 0.819099
Target:  5'- gCGGgGCGGCCGcGUcccGGAGCgAUUCCg -3'
miRNA:   3'- gGCCgCGCCGGUuUAa--CCUUG-UAGGG- -5'
9179 3' -53.3 NC_002512.2 + 213841 0.73 0.819099
Target:  5'- -aGGCGCGGCgCGGGga-GAAgAUCCCg -3'
miRNA:   3'- ggCCGCGCCG-GUUUaacCUUgUAGGG- -5'
9179 3' -53.3 NC_002512.2 + 113155 0.73 0.827454
Target:  5'- gCCGGCcucgccGCGGCCGGGcgGGAcgcgaccgGCGUCgCCg -3'
miRNA:   3'- -GGCCG------CGCCGGUUUaaCCU--------UGUAG-GG- -5'
9179 3' -53.3 NC_002512.2 + 111911 0.73 0.827454
Target:  5'- cCCGaGCagcaCGGCCAGGcggGGAGCGUCCa -3'
miRNA:   3'- -GGC-CGc---GCCGGUUUaa-CCUUGUAGGg -5'
9179 3' -53.3 NC_002512.2 + 95149 0.73 0.827454
Target:  5'- cCCGGCG-GGUCGAGgaccGGAGCcuUCCCc -3'
miRNA:   3'- -GGCCGCgCCGGUUUaa--CCUUGu-AGGG- -5'
9179 3' -53.3 NC_002512.2 + 191207 0.73 0.835639
Target:  5'- gUCGGCuCGGUCuuccccgGGGGCGUCCCc -3'
miRNA:   3'- -GGCCGcGCCGGuuuaa--CCUUGUAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.