miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9180 3' -52.4 NC_002512.2 + 32935 1.13 0.005408
Target:  5'- gGCCGUCGAGCAGCAAUUCGGCACAACa -3'
miRNA:   3'- -CGGCAGCUCGUCGUUAAGCCGUGUUG- -5'
9180 3' -52.4 NC_002512.2 + 114107 0.77 0.610287
Target:  5'- aGUCGUCGcAGUAGCA---CGGCACGGCc -3'
miRNA:   3'- -CGGCAGC-UCGUCGUuaaGCCGUGUUG- -5'
9180 3' -52.4 NC_002512.2 + 192786 0.77 0.630787
Target:  5'- aCCGUCGuGCGGCGcg--GGCACAACg -3'
miRNA:   3'- cGGCAGCuCGUCGUuaagCCGUGUUG- -5'
9180 3' -52.4 NC_002512.2 + 91876 0.77 0.651291
Target:  5'- cGCCGUccggcgCGGGCGGCGGcgCGGCGCAc- -3'
miRNA:   3'- -CGGCA------GCUCGUCGUUaaGCCGUGUug -5'
9180 3' -52.4 NC_002512.2 + 55217 0.75 0.74179
Target:  5'- uGCCGUCGAGCucuGCAcaGUucUCGGUucCGACa -3'
miRNA:   3'- -CGGCAGCUCGu--CGU--UA--AGCCGu-GUUG- -5'
9180 3' -52.4 NC_002512.2 + 127478 0.75 0.751488
Target:  5'- uGCCGUCcgGAcGCGGCGAcgUCGGCugGAa -3'
miRNA:   3'- -CGGCAG--CU-CGUCGUUa-AGCCGugUUg -5'
9180 3' -52.4 NC_002512.2 + 94538 0.75 0.761079
Target:  5'- aGCgGUCGAcggccaGCAGCAcccCGGCGCGGCu -3'
miRNA:   3'- -CGgCAGCU------CGUCGUuaaGCCGUGUUG- -5'
9180 3' -52.4 NC_002512.2 + 128818 0.74 0.77991
Target:  5'- --gGUCGgcGGCGGCGcugUCGGCGCAGCu -3'
miRNA:   3'- cggCAGC--UCGUCGUua-AGCCGUGUUG- -5'
9180 3' -52.4 NC_002512.2 + 111176 0.74 0.780838
Target:  5'- cGCCGgCGAGCGGCAGgcgggggaagcccaCGGCGcCGACg -3'
miRNA:   3'- -CGGCaGCUCGUCGUUaa------------GCCGU-GUUG- -5'
9180 3' -52.4 NC_002512.2 + 144581 0.73 0.815904
Target:  5'- -aCGUCGAGCGGCAGgcgUCGauccccucGCACGAg -3'
miRNA:   3'- cgGCAGCUCGUCGUUa--AGC--------CGUGUUg -5'
9180 3' -52.4 NC_002512.2 + 119092 0.73 0.824504
Target:  5'- cGCgCGagGAGguGCGGgcggccUCGGCGCAGCu -3'
miRNA:   3'- -CG-GCagCUCguCGUUa-----AGCCGUGUUG- -5'
9180 3' -52.4 NC_002512.2 + 223268 0.73 0.824504
Target:  5'- cGUCGUCGGGgGGCGGgacgcCGcGCGCAGCu -3'
miRNA:   3'- -CGGCAGCUCgUCGUUaa---GC-CGUGUUG- -5'
9180 3' -52.4 NC_002512.2 + 217824 0.73 0.832929
Target:  5'- aUCGUCGAcgGCgGGCGGUUCGGCagagGCGGCa -3'
miRNA:   3'- cGGCAGCU--CG-UCGUUAAGCCG----UGUUG- -5'
9180 3' -52.4 NC_002512.2 + 170774 0.73 0.832929
Target:  5'- aGCgCGaCGGGC-GCGA-UCGGCGCGACg -3'
miRNA:   3'- -CG-GCaGCUCGuCGUUaAGCCGUGUUG- -5'
9180 3' -52.4 NC_002512.2 + 154700 0.72 0.857075
Target:  5'- gGCCGUCcGGCGuCGAg-CGGCGCGACg -3'
miRNA:   3'- -CGGCAGcUCGUcGUUaaGCCGUGUUG- -5'
9180 3' -52.4 NC_002512.2 + 215062 0.72 0.857075
Target:  5'- cGUCGUCG-GCGGCGucuaccgcgUCGGCGgGACc -3'
miRNA:   3'- -CGGCAGCuCGUCGUua-------AGCCGUgUUG- -5'
9180 3' -52.4 NC_002512.2 + 157162 0.72 0.857075
Target:  5'- gGCgGgcCGGGCGGCGugggcggCGGCGCGACg -3'
miRNA:   3'- -CGgCa-GCUCGUCGUuaa----GCCGUGUUG- -5'
9180 3' -52.4 NC_002512.2 + 185364 0.72 0.864723
Target:  5'- cGCCGUCGA-CuGCGAcaccUUCGGCgGCGGCu -3'
miRNA:   3'- -CGGCAGCUcGuCGUU----AAGCCG-UGUUG- -5'
9180 3' -52.4 NC_002512.2 + 200952 0.72 0.879384
Target:  5'- cGCCGUCGAGUGGUA---CGGCAgAu- -3'
miRNA:   3'- -CGGCAGCUCGUCGUuaaGCCGUgUug -5'
9180 3' -52.4 NC_002512.2 + 74638 0.72 0.879384
Target:  5'- aGCCGUCGAcGCcGCGAcgggCGGgACGGCc -3'
miRNA:   3'- -CGGCAGCU-CGuCGUUaa--GCCgUGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.