miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9180 3' -52.4 NC_002512.2 + 32935 1.13 0.005408
Target:  5'- gGCCGUCGAGCAGCAAUUCGGCACAACa -3'
miRNA:   3'- -CGGCAGCUCGUCGUUAAGCCGUGUUG- -5'
9180 3' -52.4 NC_002512.2 + 35926 0.66 0.995046
Target:  5'- cGCCauGUCGgaguGGCGGCAuggaacgaUCGGUACGAg -3'
miRNA:   3'- -CGG--CAGC----UCGUCGUua------AGCCGUGUUg -5'
9180 3' -52.4 NC_002512.2 + 55217 0.75 0.74179
Target:  5'- uGCCGUCGAGCucuGCAcaGUucUCGGUucCGACa -3'
miRNA:   3'- -CGGCAGCUCGu--CGU--UA--AGCCGu-GUUG- -5'
9180 3' -52.4 NC_002512.2 + 74638 0.72 0.879384
Target:  5'- aGCCGUCGAcGCcGCGAcgggCGGgACGGCc -3'
miRNA:   3'- -CGGCAGCU-CGuCGUUaa--GCCgUGUUG- -5'
9180 3' -52.4 NC_002512.2 + 77639 0.69 0.966547
Target:  5'- cGCUGUCGAGCGacgacacguuccGCAGacgggUCGGCAgguuuauagguCGACa -3'
miRNA:   3'- -CGGCAGCUCGU------------CGUUa----AGCCGU-----------GUUG- -5'
9180 3' -52.4 NC_002512.2 + 87719 0.71 0.893161
Target:  5'- cGCCG-CGAGaCGGCuccucUCGGaCGCGACg -3'
miRNA:   3'- -CGGCaGCUC-GUCGuua--AGCC-GUGUUG- -5'
9180 3' -52.4 NC_002512.2 + 90625 0.69 0.966547
Target:  5'- cGCgCGcCGGGCGGCGcgaccCGGCGCcGCg -3'
miRNA:   3'- -CG-GCaGCUCGUCGUuaa--GCCGUGuUG- -5'
9180 3' -52.4 NC_002512.2 + 91876 0.77 0.651291
Target:  5'- cGCCGUccggcgCGGGCGGCGGcgCGGCGCAc- -3'
miRNA:   3'- -CGGCA------GCUCGUCGUUaaGCCGUGUug -5'
9180 3' -52.4 NC_002512.2 + 92543 0.67 0.98198
Target:  5'- gGCCG-CG-GCGGCcg--CGGCgACGACg -3'
miRNA:   3'- -CGGCaGCuCGUCGuuaaGCCG-UGUUG- -5'
9180 3' -52.4 NC_002512.2 + 92587 0.67 0.985687
Target:  5'- gGCCGggagGGGCGGCGGUcccgaggcCGGuCGCGACg -3'
miRNA:   3'- -CGGCag--CUCGUCGUUAa-------GCC-GUGUUG- -5'
9180 3' -52.4 NC_002512.2 + 94538 0.75 0.761079
Target:  5'- aGCgGUCGAcggccaGCAGCAcccCGGCGCGGCu -3'
miRNA:   3'- -CGgCAGCU------CGUCGUuaaGCCGUGUUG- -5'
9180 3' -52.4 NC_002512.2 + 94632 0.67 0.98198
Target:  5'- cUCGUCGAGC-GCGGcgCGG-ACGACg -3'
miRNA:   3'- cGGCAGCUCGuCGUUaaGCCgUGUUG- -5'
9180 3' -52.4 NC_002512.2 + 95957 0.71 0.899707
Target:  5'- gGCCGUCGGGCcgccgccguacAGCAGgagguaGGC-CAGCg -3'
miRNA:   3'- -CGGCAGCUCG-----------UCGUUaag---CCGuGUUG- -5'
9180 3' -52.4 NC_002512.2 + 97645 0.66 0.994268
Target:  5'- -aCGUaCGAGCGGCugaacgcguccgAGUUCGcGCGgGACa -3'
miRNA:   3'- cgGCA-GCUCGUCG------------UUAAGC-CGUgUUG- -5'
9180 3' -52.4 NC_002512.2 + 98475 0.67 0.987306
Target:  5'- -aCGUUGAGCAcGCAGUUCaccgcaucccgGGUgaACAGCg -3'
miRNA:   3'- cgGCAGCUCGU-CGUUAAG-----------CCG--UGUUG- -5'
9180 3' -52.4 NC_002512.2 + 100376 0.67 0.988207
Target:  5'- aGCUGcCGAGuCAGCAGgagcgagcuccagUUGGCgACGGCg -3'
miRNA:   3'- -CGGCaGCUC-GUCGUUa------------AGCCG-UGUUG- -5'
9180 3' -52.4 NC_002512.2 + 100509 0.67 0.988207
Target:  5'- gGUCGUCGAGCAcccGCAcgagacagaaGGCgACGACg -3'
miRNA:   3'- -CGGCAGCUCGU---CGUuaag------CCG-UGUUG- -5'
9180 3' -52.4 NC_002512.2 + 101420 0.66 0.990118
Target:  5'- uCCGagGgcacAGCGGCGGccggCGGCGCGGCg -3'
miRNA:   3'- cGGCagC----UCGUCGUUaa--GCCGUGUUG- -5'
9180 3' -52.4 NC_002512.2 + 103503 0.7 0.928899
Target:  5'- cGCuCGcCGGGCAGCGcgUUGGUgacCAGCa -3'
miRNA:   3'- -CG-GCaGCUCGUCGUuaAGCCGu--GUUG- -5'
9180 3' -52.4 NC_002512.2 + 106052 0.69 0.956063
Target:  5'- cGCCG-CGGGC-GCAGaUCGuGCgACAGCg -3'
miRNA:   3'- -CGGCaGCUCGuCGUUaAGC-CG-UGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.