miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9181 3' -49.2 NC_002512.2 + 103481 0.66 0.999828
Target:  5'- -gGUcuCgGCGGCg--GCCGcgGACCg -3'
miRNA:   3'- caCAauGgUGCCGauaCGGCuaUUGG- -5'
9181 3' -49.2 NC_002512.2 + 222437 0.66 0.999828
Target:  5'- ----cGCCGCGGCUucccccggGCCGcg-GCCa -3'
miRNA:   3'- cacaaUGGUGCCGAua------CGGCuauUGG- -5'
9181 3' -49.2 NC_002512.2 + 224494 0.66 0.999824
Target:  5'- ----cGCCAaacacucCGGCUGUGUCGGgugcGCCa -3'
miRNA:   3'- cacaaUGGU-------GCCGAUACGGCUau--UGG- -5'
9181 3' -49.2 NC_002512.2 + 219574 0.66 0.99978
Target:  5'- cGUG-UGCgACGGCUccuacGUcCUGGUGGCCg -3'
miRNA:   3'- -CACaAUGgUGCCGA-----UAcGGCUAUUGG- -5'
9181 3' -49.2 NC_002512.2 + 151359 0.66 0.99978
Target:  5'- aUGUUGCCucaagAUGGCgccgGCCGAaAACg -3'
miRNA:   3'- cACAAUGG-----UGCCGaua-CGGCUaUUGg -5'
9181 3' -49.2 NC_002512.2 + 227673 0.66 0.99978
Target:  5'- ----aGCgGCGGCgccGCCGGcGACCg -3'
miRNA:   3'- cacaaUGgUGCCGauaCGGCUaUUGG- -5'
9181 3' -49.2 NC_002512.2 + 104747 0.66 0.99978
Target:  5'- -cGggGCCcccGCGGUUcacgcGUGCUGcAUGACCa -3'
miRNA:   3'- caCaaUGG---UGCCGA-----UACGGC-UAUUGG- -5'
9181 3' -49.2 NC_002512.2 + 217056 0.66 0.999722
Target:  5'- ----gGCCGCGuGCUgcAUGUCGGUGAUg -3'
miRNA:   3'- cacaaUGGUGC-CGA--UACGGCUAUUGg -5'
9181 3' -49.2 NC_002512.2 + 190012 0.66 0.999722
Target:  5'- -aGUUgGCCGCGGUcgagGCCGAcaUGAUCc -3'
miRNA:   3'- caCAA-UGGUGCCGaua-CGGCU--AUUGG- -5'
9181 3' -49.2 NC_002512.2 + 96214 0.66 0.999722
Target:  5'- -gGUcgGCCACGGCg--GCCGcgGcggcggcggcgACCg -3'
miRNA:   3'- caCAa-UGGUGCCGauaCGGCuaU-----------UGG- -5'
9181 3' -49.2 NC_002512.2 + 194618 0.66 0.99965
Target:  5'- ----cGCCGCGGCcGUcGCCGcggggGACCu -3'
miRNA:   3'- cacaaUGGUGCCGaUA-CGGCua---UUGG- -5'
9181 3' -49.2 NC_002512.2 + 184995 0.66 0.99965
Target:  5'- cGUGgagcGCUGCGGCccgGUGCCGcuGUAcagcGCCg -3'
miRNA:   3'- -CACaa--UGGUGCCGa--UACGGC--UAU----UGG- -5'
9181 3' -49.2 NC_002512.2 + 225779 0.67 0.999458
Target:  5'- cUGUUcCCGaGGCUGcGCCGGccgGGCCg -3'
miRNA:   3'- cACAAuGGUgCCGAUaCGGCUa--UUGG- -5'
9181 3' -49.2 NC_002512.2 + 116736 0.67 0.999458
Target:  5'- -cGUgGCC-CGGCUgAUGgCGAUgGACCa -3'
miRNA:   3'- caCAaUGGuGCCGA-UACgGCUA-UUGG- -5'
9181 3' -49.2 NC_002512.2 + 228577 0.67 0.999331
Target:  5'- --cUUACCGCGGUcGUGUCGGcGGCa -3'
miRNA:   3'- cacAAUGGUGCCGaUACGGCUaUUGg -5'
9181 3' -49.2 NC_002512.2 + 203116 0.67 0.999331
Target:  5'- ----gGCCAgGGCgUcgGCCGAgucgugGGCCa -3'
miRNA:   3'- cacaaUGGUgCCG-AuaCGGCUa-----UUGG- -5'
9181 3' -49.2 NC_002512.2 + 90672 0.67 0.999331
Target:  5'- -cGgcgGCCGCGGCg--GCCag-GGCCa -3'
miRNA:   3'- caCaa-UGGUGCCGauaCGGcuaUUGG- -5'
9181 3' -49.2 NC_002512.2 + 158660 0.67 0.999179
Target:  5'- -cGUcgagGCCACGGUcAUcGCCGGaucaUGGCCg -3'
miRNA:   3'- caCAa---UGGUGCCGaUA-CGGCU----AUUGG- -5'
9181 3' -49.2 NC_002512.2 + 102557 0.67 0.998784
Target:  5'- -cGU--CCGCGGC---GUCGAUGGCCg -3'
miRNA:   3'- caCAauGGUGCCGauaCGGCUAUUGG- -5'
9181 3' -49.2 NC_002512.2 + 124321 0.68 0.998238
Target:  5'- -cGggGCCGCGGCggacGUGCUGcgGcuguACCu -3'
miRNA:   3'- caCaaUGGUGCCGa---UACGGCuaU----UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.