Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9182 | 5' | -50.6 | NC_002512.2 | + | 7169 | 1.09 | 0.013359 |
Target: 5'- aAUGGAACCACUAUCGGACCGAGAAACg -3' miRNA: 3'- -UACCUUGGUGAUAGCCUGGCUCUUUG- -5' |
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9182 | 5' | -50.6 | NC_002512.2 | + | 222638 | 0.73 | 0.911097 |
Target: 5'- -cGGAcGCCGCUccgccgcgacggccgGcCGGGCCGAGggGCg -3' miRNA: 3'- uaCCU-UGGUGA---------------UaGCCUGGCUCuuUG- -5' |
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9182 | 5' | -50.6 | NC_002512.2 | + | 132089 | 0.72 | 0.92053 |
Target: 5'- -cGGAGCCggaGCgcUCGGACCGGGGcuCg -3' miRNA: 3'- uaCCUUGG---UGauAGCCUGGCUCUuuG- -5' |
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9182 | 5' | -50.6 | NC_002512.2 | + | 227213 | 0.72 | 0.931431 |
Target: 5'- -cGcGGACCAggAggcggCGGACCGGGAGGCg -3' miRNA: 3'- uaC-CUUGGUgaUa----GCCUGGCUCUUUG- -5' |
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9182 | 5' | -50.6 | NC_002512.2 | + | 193929 | 0.72 | 0.93651 |
Target: 5'- -cGGAcuCCGCUGaCGG-CCGGGGAACg -3' miRNA: 3'- uaCCUu-GGUGAUaGCCuGGCUCUUUG- -5' |
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9182 | 5' | -50.6 | NC_002512.2 | + | 73467 | 0.72 | 0.941343 |
Target: 5'- -cGGAACgACUAg-GGAUCGAGGAAUc -3' miRNA: 3'- uaCCUUGgUGAUagCCUGGCUCUUUG- -5' |
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9182 | 5' | -50.6 | NC_002512.2 | + | 40655 | 0.71 | 0.954383 |
Target: 5'- -aGGAACCGCgAUCGuucuuuguGACCGGGcAAGCg -3' miRNA: 3'- uaCCUUGGUGaUAGC--------CUGGCUC-UUUG- -5' |
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9182 | 5' | -50.6 | NC_002512.2 | + | 99565 | 0.71 | 0.954383 |
Target: 5'- -cGuGAACCGCU-UCGGACCGAagccGAACa -3' miRNA: 3'- uaC-CUUGGUGAuAGCCUGGCUc---UUUG- -5' |
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9182 | 5' | -50.6 | NC_002512.2 | + | 109066 | 0.71 | 0.954383 |
Target: 5'- -cGGAcccGCCGCguccCGGGuCCGAGAGACc -3' miRNA: 3'- uaCCU---UGGUGaua-GCCU-GGCUCUUUG- -5' |
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9182 | 5' | -50.6 | NC_002512.2 | + | 202270 | 0.7 | 0.968498 |
Target: 5'- -cGGAGCgucucuccgCGCUGUgGGACCGGGgcGCc -3' miRNA: 3'- uaCCUUG---------GUGAUAgCCUGGCUCuuUG- -5' |
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9182 | 5' | -50.6 | NC_002512.2 | + | 193678 | 0.69 | 0.985237 |
Target: 5'- -aGGAGggcucCCGCaGUCGGucCCGGGGGACg -3' miRNA: 3'- uaCCUU-----GGUGaUAGCCu-GGCUCUUUG- -5' |
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9182 | 5' | -50.6 | NC_002512.2 | + | 104131 | 0.69 | 0.98692 |
Target: 5'- cUGG-AUCACggaCGGGCUGGGGGACg -3' miRNA: 3'- uACCuUGGUGauaGCCUGGCUCUUUG- -5' |
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9182 | 5' | -50.6 | NC_002512.2 | + | 119559 | 0.69 | 0.98692 |
Target: 5'- -gGGGACCGgg--CGGACCGcGGGAGCc -3' miRNA: 3'- uaCCUUGGUgauaGCCUGGC-UCUUUG- -5' |
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9182 | 5' | -50.6 | NC_002512.2 | + | 124798 | 0.69 | 0.98692 |
Target: 5'- -cGGGuCCAgCUGaCGGAgCCGGGAGACu -3' miRNA: 3'- uaCCUuGGU-GAUaGCCU-GGCUCUUUG- -5' |
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9182 | 5' | -50.6 | NC_002512.2 | + | 118412 | 0.68 | 0.988452 |
Target: 5'- cUGGAgaGCCaACUGaaGGGCCGGGcGACg -3' miRNA: 3'- uACCU--UGG-UGAUagCCUGGCUCuUUG- -5' |
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9182 | 5' | -50.6 | NC_002512.2 | + | 166486 | 0.68 | 0.989841 |
Target: 5'- -cGGGACCGCggGUCGGAggaaGaAGAAGCg -3' miRNA: 3'- uaCCUUGGUGa-UAGCCUgg--C-UCUUUG- -5' |
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9182 | 5' | -50.6 | NC_002512.2 | + | 220208 | 0.68 | 0.989841 |
Target: 5'- -cGGGGCCcgACgg-CGGcCCGGGGGACg -3' miRNA: 3'- uaCCUUGG--UGauaGCCuGGCUCUUUG- -5' |
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9182 | 5' | -50.6 | NC_002512.2 | + | 44579 | 0.68 | 0.991095 |
Target: 5'- cUGGAACUAacGUgGGAUCGAGAAu- -3' miRNA: 3'- uACCUUGGUgaUAgCCUGGCUCUUug -5' |
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9182 | 5' | -50.6 | NC_002512.2 | + | 90737 | 0.68 | 0.991095 |
Target: 5'- -cGGAACCAgUccUUGGcgaacgacccgGCCGAGAAGCg -3' miRNA: 3'- uaCCUUGGUgAu-AGCC-----------UGGCUCUUUG- -5' |
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9182 | 5' | -50.6 | NC_002512.2 | + | 149423 | 0.68 | 0.992224 |
Target: 5'- -gGGGACCGCggcgggggCGGGCgCGGGggGa -3' miRNA: 3'- uaCCUUGGUGaua-----GCCUG-GCUCuuUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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