miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9182 5' -50.6 NC_002512.2 + 7169 1.09 0.013359
Target:  5'- aAUGGAACCACUAUCGGACCGAGAAACg -3'
miRNA:   3'- -UACCUUGGUGAUAGCCUGGCUCUUUG- -5'
9182 5' -50.6 NC_002512.2 + 26512 0.66 0.99891
Target:  5'- cUGGAauGCCGCcgAUCGuuuCCGAGGAAg -3'
miRNA:   3'- uACCU--UGGUGa-UAGCcu-GGCUCUUUg -5'
9182 5' -50.6 NC_002512.2 + 35427 0.66 0.998682
Target:  5'- -cGaGGACCACUcgCGuuCCaGAGAAACu -3'
miRNA:   3'- uaC-CUUGGUGAuaGCcuGG-CUCUUUG- -5'
9182 5' -50.6 NC_002512.2 + 40655 0.71 0.954383
Target:  5'- -aGGAACCGCgAUCGuucuuuguGACCGGGcAAGCg -3'
miRNA:   3'- uaCCUUGGUGaUAGC--------CUGGCUC-UUUG- -5'
9182 5' -50.6 NC_002512.2 + 44579 0.68 0.991095
Target:  5'- cUGGAACUAacGUgGGAUCGAGAAu- -3'
miRNA:   3'- uACCUUGGUgaUAgCCUGGCUCUUug -5'
9182 5' -50.6 NC_002512.2 + 73467 0.72 0.941343
Target:  5'- -cGGAACgACUAg-GGAUCGAGGAAUc -3'
miRNA:   3'- uaCCUUGgUGAUagCCUGGCUCUUUG- -5'
9182 5' -50.6 NC_002512.2 + 90737 0.68 0.991095
Target:  5'- -cGGAACCAgUccUUGGcgaacgacccgGCCGAGAAGCg -3'
miRNA:   3'- uaCCUUGGUgAu-AGCC-----------UGGCUCUUUG- -5'
9182 5' -50.6 NC_002512.2 + 96523 0.66 0.998414
Target:  5'- -gGGAGCCGCgccggCGGugUGAgccGggGCc -3'
miRNA:   3'- uaCCUUGGUGaua--GCCugGCU---CuuUG- -5'
9182 5' -50.6 NC_002512.2 + 99565 0.71 0.954383
Target:  5'- -cGuGAACCGCU-UCGGACCGAagccGAACa -3'
miRNA:   3'- uaC-CUUGGUGAuAGCCUGGCUc---UUUG- -5'
9182 5' -50.6 NC_002512.2 + 100113 0.66 0.998067
Target:  5'- -aGGGGCCGacguccagguccuCUAggCGGACCaGGAGGCa -3'
miRNA:   3'- uaCCUUGGU-------------GAUa-GCCUGGcUCUUUG- -5'
9182 5' -50.6 NC_002512.2 + 104131 0.69 0.98692
Target:  5'- cUGG-AUCACggaCGGGCUGGGGGACg -3'
miRNA:   3'- uACCuUGGUGauaGCCUGGCUCUUUG- -5'
9182 5' -50.6 NC_002512.2 + 109066 0.71 0.954383
Target:  5'- -cGGAcccGCCGCguccCGGGuCCGAGAGACc -3'
miRNA:   3'- uaCCU---UGGUGaua-GCCU-GGCUCUUUG- -5'
9182 5' -50.6 NC_002512.2 + 115705 0.67 0.995657
Target:  5'- gGUGGAgaACaagaucaaGCUGUCGGaggcgGCCGAGAcGACg -3'
miRNA:   3'- -UACCU--UGg-------UGAUAGCC-----UGGCUCU-UUG- -5'
9182 5' -50.6 NC_002512.2 + 118412 0.68 0.988452
Target:  5'- cUGGAgaGCCaACUGaaGGGCCGGGcGACg -3'
miRNA:   3'- uACCU--UGG-UGAUagCCUGGCUCuUUG- -5'
9182 5' -50.6 NC_002512.2 + 119559 0.69 0.98692
Target:  5'- -gGGGACCGgg--CGGACCGcGGGAGCc -3'
miRNA:   3'- uaCCUUGGUgauaGCCUGGC-UCUUUG- -5'
9182 5' -50.6 NC_002512.2 + 120616 0.66 0.998414
Target:  5'- -cGGGAUCACgAUCaccuGuCCGAGAAACg -3'
miRNA:   3'- uaCCUUGGUGaUAGc---CuGGCUCUUUG- -5'
9182 5' -50.6 NC_002512.2 + 123146 0.66 0.997318
Target:  5'- -cGGAgcGCCGCcg--GGGCCGAGGAGg -3'
miRNA:   3'- uaCCU--UGGUGauagCCUGGCUCUUUg -5'
9182 5' -50.6 NC_002512.2 + 124798 0.69 0.98692
Target:  5'- -cGGGuCCAgCUGaCGGAgCCGGGAGACu -3'
miRNA:   3'- uaCCUuGGU-GAUaGCCU-GGCUCUUUG- -5'
9182 5' -50.6 NC_002512.2 + 132089 0.72 0.92053
Target:  5'- -cGGAGCCggaGCgcUCGGACCGGGGcuCg -3'
miRNA:   3'- uaCCUUGG---UGauAGCCUGGCUCUuuG- -5'
9182 5' -50.6 NC_002512.2 + 136451 0.67 0.994945
Target:  5'- -cGGGGCCACUAcaucCGcGCCGAGuacGACg -3'
miRNA:   3'- uaCCUUGGUGAUa---GCcUGGCUCu--UUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.