miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9183 3' -61.2 NC_002512.2 + 3491 1.1 0.001412
Target:  5'- gUCGCCGCCGACUCCUGCGUCGCAGGCc -3'
miRNA:   3'- -AGCGGCGGCUGAGGACGCAGCGUCCG- -5'
9183 3' -61.2 NC_002512.2 + 217115 0.85 0.074724
Target:  5'- gCGCCGCCGAgUCCUGCGgcggcagcaGCGGGCc -3'
miRNA:   3'- aGCGGCGGCUgAGGACGCag-------CGUCCG- -5'
9183 3' -61.2 NC_002512.2 + 143544 0.77 0.237206
Target:  5'- gUCGCCGUCGGCggCCgcGCGUcucccCGCGGGCg -3'
miRNA:   3'- -AGCGGCGGCUGa-GGa-CGCA-----GCGUCCG- -5'
9183 3' -61.2 NC_002512.2 + 218179 0.77 0.248159
Target:  5'- cUCGguaCGCCGGCUCCUGCcUCGCcccucGGGCc -3'
miRNA:   3'- -AGCg--GCGGCUGAGGACGcAGCG-----UCCG- -5'
9183 3' -61.2 NC_002512.2 + 205622 0.76 0.257795
Target:  5'- gUCGCCGCCGuccUUCCUGCccgcgggggacgccGUCGgCGGGCc -3'
miRNA:   3'- -AGCGGCGGCu--GAGGACG--------------CAGC-GUCCG- -5'
9183 3' -61.2 NC_002512.2 + 199619 0.76 0.289801
Target:  5'- aUGgCGCCGGCUCCgcGCGUCcGCGGGg -3'
miRNA:   3'- aGCgGCGGCUGAGGa-CGCAG-CGUCCg -5'
9183 3' -61.2 NC_002512.2 + 132693 0.75 0.30926
Target:  5'- cCGCCGCCGcAgaCggGCGUCGUGGGCg -3'
miRNA:   3'- aGCGGCGGC-UgaGgaCGCAGCGUCCG- -5'
9183 3' -61.2 NC_002512.2 + 223489 0.75 0.30926
Target:  5'- cCGCCGCCGcCUcCCUGCccGUCGCGacgaccacGGCg -3'
miRNA:   3'- aGCGGCGGCuGA-GGACG--CAGCGU--------CCG- -5'
9183 3' -61.2 NC_002512.2 + 108152 0.75 0.315964
Target:  5'- -aGCU-CCGACUCCUccgGCGUCGCcGGCg -3'
miRNA:   3'- agCGGcGGCUGAGGA---CGCAGCGuCCG- -5'
9183 3' -61.2 NC_002512.2 + 99904 0.75 0.323464
Target:  5'- gCGCCGCCGgcGCUCCcggcgguguucgaucGCGUCGCAGacGCa -3'
miRNA:   3'- aGCGGCGGC--UGAGGa--------------CGCAGCGUC--CG- -5'
9183 3' -61.2 NC_002512.2 + 209675 0.75 0.327611
Target:  5'- aUGCCGCUGGCcCuCUGCGUCaacaucuucgagguGCAGGCc -3'
miRNA:   3'- aGCGGCGGCUGaG-GACGCAG--------------CGUCCG- -5'
9183 3' -61.2 NC_002512.2 + 178605 0.74 0.33673
Target:  5'- cCGCCGCCGACUCggucgccGCGUCcacGUAGGUu -3'
miRNA:   3'- aGCGGCGGCUGAGga-----CGCAG---CGUCCG- -5'
9183 3' -61.2 NC_002512.2 + 169003 0.74 0.343869
Target:  5'- gUCGCgCGCCGGCUCg-GCGaUCcggGCGGGCg -3'
miRNA:   3'- -AGCG-GCGGCUGAGgaCGC-AG---CGUCCG- -5'
9183 3' -61.2 NC_002512.2 + 108275 0.74 0.365936
Target:  5'- uUCGCCG--GGCUgCCUGaagaaGUCGCAGGCg -3'
miRNA:   3'- -AGCGGCggCUGA-GGACg----CAGCGUCCG- -5'
9183 3' -61.2 NC_002512.2 + 227866 0.74 0.373505
Target:  5'- gUCGCUccuccugguGCCGGCUCagGCGaCGCGGGCg -3'
miRNA:   3'- -AGCGG---------CGGCUGAGgaCGCaGCGUCCG- -5'
9183 3' -61.2 NC_002512.2 + 73342 0.74 0.373505
Target:  5'- -aGCCGUCacgcGCUCCgaaccgGCGUCGCAGGa -3'
miRNA:   3'- agCGGCGGc---UGAGGa-----CGCAGCGUCCg -5'
9183 3' -61.2 NC_002512.2 + 185996 0.74 0.38118
Target:  5'- gUCGCCGuggugggucguCCGGCaccuggacgCCUGCGUCGCGcucGGCa -3'
miRNA:   3'- -AGCGGC-----------GGCUGa--------GGACGCAGCGU---CCG- -5'
9183 3' -61.2 NC_002512.2 + 220824 0.73 0.404827
Target:  5'- cCGCCGCUGGC-CgUGCucGUCGaCGGGCu -3'
miRNA:   3'- aGCGGCGGCUGaGgACG--CAGC-GUCCG- -5'
9183 3' -61.2 NC_002512.2 + 213501 0.73 0.412913
Target:  5'- gCGcCCGUCGACUUCgaggGCGUCGUccGGGUc -3'
miRNA:   3'- aGC-GGCGGCUGAGGa---CGCAGCG--UCCG- -5'
9183 3' -61.2 NC_002512.2 + 221358 0.73 0.428546
Target:  5'- cUCGCCGCUccgugucggugguGugUCCUcuccucggGCGgggCGCGGGCg -3'
miRNA:   3'- -AGCGGCGG-------------CugAGGA--------CGCa--GCGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.