miRNA display CGI


Results 1 - 20 of 155 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9183 3' -61.2 NC_002512.2 + 3491 1.1 0.001412
Target:  5'- gUCGCCGCCGACUCCUGCGUCGCAGGCc -3'
miRNA:   3'- -AGCGGCGGCUGAGGACGCAGCGUCCG- -5'
9183 3' -61.2 NC_002512.2 + 4724 0.71 0.526182
Target:  5'- gUUGCUcCCGGCUCCgggcaUGCGUCGUcgacggcggaagAGGCg -3'
miRNA:   3'- -AGCGGcGGCUGAGG-----ACGCAGCG------------UCCG- -5'
9183 3' -61.2 NC_002512.2 + 5810 0.66 0.820465
Target:  5'- cCGCCGCCGcC-CCguucggcgGCGUCGaaauGGUc -3'
miRNA:   3'- aGCGGCGGCuGaGGa-------CGCAGCgu--CCG- -5'
9183 3' -61.2 NC_002512.2 + 66360 0.7 0.582358
Target:  5'- cCGUCuuaGCUGGCUCCgucaugaucgugUGCGcaaUCGCGGGCg -3'
miRNA:   3'- aGCGG---CGGCUGAGG------------ACGC---AGCGUCCG- -5'
9183 3' -61.2 NC_002512.2 + 70236 0.72 0.472166
Target:  5'- cUCGgUGCCGGCgcucgUCUGCGagaaUCGCGGGUc -3'
miRNA:   3'- -AGCgGCGGCUGa----GGACGC----AGCGUCCG- -5'
9183 3' -61.2 NC_002512.2 + 73083 0.66 0.78725
Target:  5'- -gGCCGUCcugguuCUCCUGCGUaacaAGGCg -3'
miRNA:   3'- agCGGCGGcu----GAGGACGCAgcg-UCCG- -5'
9183 3' -61.2 NC_002512.2 + 73342 0.74 0.373505
Target:  5'- -aGCCGUCacgcGCUCCgaaccgGCGUCGCAGGa -3'
miRNA:   3'- agCGGCGGc---UGAGGa-----CGCAGCGUCCg -5'
9183 3' -61.2 NC_002512.2 + 74638 0.71 0.53542
Target:  5'- -aGCCGUCGACgCCgcgacggGCGggacggcCGCGGGCg -3'
miRNA:   3'- agCGGCGGCUGaGGa------CGCa------GCGUCCG- -5'
9183 3' -61.2 NC_002512.2 + 75073 0.66 0.80413
Target:  5'- cCGCCGCCG-CUgCCUcCGUCGCu--- -3'
miRNA:   3'- aGCGGCGGCuGA-GGAcGCAGCGuccg -5'
9183 3' -61.2 NC_002512.2 + 76845 0.66 0.80413
Target:  5'- aCGCgGCCGACg---GCGuUCGaguaGGGCg -3'
miRNA:   3'- aGCGgCGGCUGaggaCGC-AGCg---UCCG- -5'
9183 3' -61.2 NC_002512.2 + 77091 0.66 0.81237
Target:  5'- gUCGCCGCgGAcCUCCga-GaCGgAGGCc -3'
miRNA:   3'- -AGCGGCGgCU-GAGGacgCaGCgUCCG- -5'
9183 3' -61.2 NC_002512.2 + 87718 0.72 0.480097
Target:  5'- aCGCCGCgagaCGGCUCCUcucggacGCGaCGCGGGg -3'
miRNA:   3'- aGCGGCG----GCUGAGGA-------CGCaGCGUCCg -5'
9183 3' -61.2 NC_002512.2 + 91875 0.67 0.743044
Target:  5'- cCGCCGuCCGGCgcggGCGgcggCGCGGcGCa -3'
miRNA:   3'- aGCGGC-GGCUGaggaCGCa---GCGUC-CG- -5'
9183 3' -61.2 NC_002512.2 + 92136 0.67 0.761034
Target:  5'- aCGCUGCgGGCg-CUGCGgcgcgUGCAGGa -3'
miRNA:   3'- aGCGGCGgCUGagGACGCa----GCGUCCg -5'
9183 3' -61.2 NC_002512.2 + 93961 0.66 0.78725
Target:  5'- aUGCCGuaCCGACUCaggacGUGUCGCuGcGCg -3'
miRNA:   3'- aGCGGC--GGCUGAGga---CGCAGCGuC-CG- -5'
9183 3' -61.2 NC_002512.2 + 94220 0.72 0.454785
Target:  5'- gCGCCGCCucCgaggCCUGgGUCGCgaucAGGCc -3'
miRNA:   3'- aGCGGCGGcuGa---GGACgCAGCG----UCCG- -5'
9183 3' -61.2 NC_002512.2 + 96111 0.7 0.571941
Target:  5'- cCGCCGCCGuCgUCgUcgucgucgucgucGuCGUCGCGGGCg -3'
miRNA:   3'- aGCGGCGGCuG-AGgA-------------C-GCAGCGUCCG- -5'
9183 3' -61.2 NC_002512.2 + 96655 0.68 0.677804
Target:  5'- gCGCCGCCGccCUCCcGuCcUCGCuGGGCg -3'
miRNA:   3'- aGCGGCGGCu-GAGGaC-GcAGCG-UCCG- -5'
9183 3' -61.2 NC_002512.2 + 99904 0.75 0.323464
Target:  5'- gCGCCGCCGgcGCUCCcggcgguguucgaucGCGUCGCAGacGCa -3'
miRNA:   3'- aGCGGCGGC--UGAGGa--------------CGCAGCGUC--CG- -5'
9183 3' -61.2 NC_002512.2 + 103375 0.66 0.80413
Target:  5'- -gGCCGCCGGagccgCCgagGCGcUCGCgcuccgGGGCc -3'
miRNA:   3'- agCGGCGGCUga---GGa--CGC-AGCG------UCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.