miRNA display CGI


Results 41 - 60 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9185 3' -62.3 NC_002512.2 + 9560 0.72 0.471834
Target:  5'- gCCGUC--CGGCCCcCCggaGCCCG-GCCCc -3'
miRNA:   3'- -GGCAGcaGCCGGGaGG---UGGGCuCGGG- -5'
9185 3' -62.3 NC_002512.2 + 9689 0.68 0.668991
Target:  5'- gCCGUCGggcccCGGCggggguucgcggaaCCUCCuCCCGAcgcagagcacgacGCCCu -3'
miRNA:   3'- -GGCAGCa----GCCG--------------GGAGGuGGGCU-------------CGGG- -5'
9185 3' -62.3 NC_002512.2 + 9743 0.74 0.332285
Target:  5'- gCCGUCGUCuaCCCgCCGCUCGcgGGCCCg -3'
miRNA:   3'- -GGCAGCAGccGGGaGGUGGGC--UCGGG- -5'
9185 3' -62.3 NC_002512.2 + 9872 0.66 0.763147
Target:  5'- gCCGagaaccucaaguUCGUCGGCagCUUCCugCCcgccGAGCCg -3'
miRNA:   3'- -GGC------------AGCAGCCG--GGAGGugGG----CUCGGg -5'
9185 3' -62.3 NC_002512.2 + 9961 0.68 0.663403
Target:  5'- gCGUCGggaGGagguuccgcgaaCCC-CCGCCgGGGCCCg -3'
miRNA:   3'- gGCAGCag-CC------------GGGaGGUGGgCUCGGG- -5'
9185 3' -62.3 NC_002512.2 + 10712 0.71 0.515624
Target:  5'- cCCGgggCGgcggCGGCcuCCUCCGcgccCCCGuGCCCg -3'
miRNA:   3'- -GGCa--GCa---GCCG--GGAGGU----GGGCuCGGG- -5'
9185 3' -62.3 NC_002512.2 + 10742 0.68 0.700444
Target:  5'- uCCGcUgGUCGGCCC---GCCgCGAcGCCCa -3'
miRNA:   3'- -GGC-AgCAGCCGGGaggUGG-GCU-CGGG- -5'
9185 3' -62.3 NC_002512.2 + 10765 0.68 0.669921
Target:  5'- gCGUCGUCGGCCC--CGCCgCGguaggcguaguagcGGCCg -3'
miRNA:   3'- gGCAGCAGCCGGGagGUGG-GC--------------UCGGg -5'
9185 3' -62.3 NC_002512.2 + 10808 0.73 0.390438
Target:  5'- gCGUCGgcgUGGCCCgccggCUGCCCGGcGUCCg -3'
miRNA:   3'- gGCAGCa--GCCGGGa----GGUGGGCU-CGGG- -5'
9185 3' -62.3 NC_002512.2 + 10959 0.66 0.792035
Target:  5'- gCCGcCGUCGGCuaccgcuuCCUgUACCCGcugcacugccgggccGGCCUc -3'
miRNA:   3'- -GGCaGCAGCCG--------GGAgGUGGGC---------------UCGGG- -5'
9185 3' -62.3 NC_002512.2 + 11096 0.72 0.430006
Target:  5'- aCGUCGUCGGCCgcggcgcggggCUCC-CCgCGGGCUUc -3'
miRNA:   3'- gGCAGCAGCCGG-----------GAGGuGG-GCUCGGG- -5'
9185 3' -62.3 NC_002512.2 + 11172 0.68 0.654073
Target:  5'- uCCGUCGcCGGCUgggaggUCCgGCCCGgGGUCCg -3'
miRNA:   3'- -GGCAGCaGCCGGg-----AGG-UGGGC-UCGGG- -5'
9185 3' -62.3 NC_002512.2 + 11319 0.66 0.780293
Target:  5'- uCCGUC-UC-GCCCUCCGC---GGCCCu -3'
miRNA:   3'- -GGCAGcAGcCGGGAGGUGggcUCGGG- -5'
9185 3' -62.3 NC_002512.2 + 11569 0.66 0.762279
Target:  5'- uCCGUCGcgUCGGCCaucucucggagguCUCC-CCgGGGUCUc -3'
miRNA:   3'- -GGCAGC--AGCCGG-------------GAGGuGGgCUCGGG- -5'
9185 3' -62.3 NC_002512.2 + 11667 0.69 0.597073
Target:  5'- gCGcCG-CGGCCCgccgCgGCCCGAggcggggGCCCg -3'
miRNA:   3'- gGCaGCaGCCGGGa---GgUGGGCU-------CGGG- -5'
9185 3' -62.3 NC_002512.2 + 11731 0.7 0.560965
Target:  5'- uCCGUCGUCGucGUCCucgcggucUCCGCCCcuuccccGGCCCc -3'
miRNA:   3'- -GGCAGCAGC--CGGG--------AGGUGGGc------UCGGG- -5'
9185 3' -62.3 NC_002512.2 + 11936 0.66 0.763147
Target:  5'- cCCcUCG--GGCCC-CCGCCuCGGGCCg -3'
miRNA:   3'- -GGcAGCagCCGGGaGGUGG-GCUCGGg -5'
9185 3' -62.3 NC_002512.2 + 11992 0.67 0.754424
Target:  5'- gUCGUCGUCGcuCCCggCCucgucCCCGuAGCCUc -3'
miRNA:   3'- -GGCAGCAGCc-GGGa-GGu----GGGC-UCGGG- -5'
9185 3' -62.3 NC_002512.2 + 12968 0.69 0.635377
Target:  5'- aUCGUCGUCGgguucaucGCCCUCCGCgCCaGGUUg -3'
miRNA:   3'- -GGCAGCAGC--------CGGGAGGUG-GGcUCGGg -5'
9185 3' -62.3 NC_002512.2 + 14629 0.68 0.700444
Target:  5'- uCCGUgGUCGGUCC-CaACCuCGAucccGCCCu -3'
miRNA:   3'- -GGCAgCAGCCGGGaGgUGG-GCU----CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.