miRNA display CGI


Results 21 - 40 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9185 3' -62.3 NC_002512.2 + 4523 0.66 0.788703
Target:  5'- gUCGUCGUcCGGUCCgacgaccuguaUCC-CCCGAaccaCCCg -3'
miRNA:   3'- -GGCAGCA-GCCGGG-----------AGGuGGGCUc---GGG- -5'
9185 3' -62.3 NC_002512.2 + 4849 0.67 0.736716
Target:  5'- uCCGUCucgCGGCCCgcggcgCCGCCUccuccgccGCCCc -3'
miRNA:   3'- -GGCAGca-GCCGGGa-----GGUGGGcu------CGGG- -5'
9185 3' -62.3 NC_002512.2 + 5135 0.71 0.524583
Target:  5'- cCCGUCGcCGcUCCUCCAgCCGGcGCCg -3'
miRNA:   3'- -GGCAGCaGCcGGGAGGUgGGCU-CGGg -5'
9185 3' -62.3 NC_002512.2 + 5458 0.71 0.524583
Target:  5'- gCCGUCGgcuggcccgCGGUCCUgcCCGCCCugcugGGGCCg -3'
miRNA:   3'- -GGCAGCa--------GCCGGGA--GGUGGG-----CUCGGg -5'
9185 3' -62.3 NC_002512.2 + 5503 0.69 0.588701
Target:  5'- gCCGcCGcggccUCGGCCUaCgCGCCCGAGUUCg -3'
miRNA:   3'- -GGCaGC-----AGCCGGGaG-GUGGGCUCGGG- -5'
9185 3' -62.3 NC_002512.2 + 6075 0.67 0.745612
Target:  5'- gCCGUCGUCGuCCCggcggucgCCGCCgaCGucCCCg -3'
miRNA:   3'- -GGCAGCAGCcGGGa-------GGUGG--GCucGGG- -5'
9185 3' -62.3 NC_002512.2 + 6135 0.7 0.542674
Target:  5'- gCUGUCGUCGGacacgaCCUCCAcgacggucuCCCGGucGUCCu -3'
miRNA:   3'- -GGCAGCAGCCg-----GGAGGU---------GGGCU--CGGG- -5'
9185 3' -62.3 NC_002512.2 + 6207 0.68 0.700444
Target:  5'- gCCGUUGUCGgcGCCCUUgGag-GAGCCCc -3'
miRNA:   3'- -GGCAGCAGC--CGGGAGgUgggCUCGGG- -5'
9185 3' -62.3 NC_002512.2 + 6598 0.68 0.700444
Target:  5'- cCCG-CGgcccgCGGCCC-CgCGCCCGGuCCCc -3'
miRNA:   3'- -GGCaGCa----GCCGGGaG-GUGGGCUcGGG- -5'
9185 3' -62.3 NC_002512.2 + 6702 0.7 0.570176
Target:  5'- cCCGUCGggCGGCCCgUCCACguaccagaCGAacuGUCCg -3'
miRNA:   3'- -GGCAGCa-GCCGGG-AGGUGg-------GCU---CGGG- -5'
9185 3' -62.3 NC_002512.2 + 6962 0.76 0.274774
Target:  5'- -gGUCGUUGGCCCgCgGgCCGAGCCUc -3'
miRNA:   3'- ggCAGCAGCCGGGaGgUgGGCUCGGG- -5'
9185 3' -62.3 NC_002512.2 + 7486 0.66 0.763147
Target:  5'- cCCGcCGaagccgCGGCgCUCCAUgaggagCCaGAGCCCg -3'
miRNA:   3'- -GGCaGCa-----GCCGgGAGGUG------GG-CUCGGG- -5'
9185 3' -62.3 NC_002512.2 + 7553 0.67 0.710514
Target:  5'- gCCGUCGcggaggaggccugucCGGCCCccggggccUCgCGCCCGAuCCCg -3'
miRNA:   3'- -GGCAGCa--------------GCCGGG--------AG-GUGGGCUcGGG- -5'
9185 3' -62.3 NC_002512.2 + 8476 0.67 0.718704
Target:  5'- gCCGUCGgacagacccgCcGCCUccCCGCCCGcGCCCc -3'
miRNA:   3'- -GGCAGCa---------GcCGGGa-GGUGGGCuCGGG- -5'
9185 3' -62.3 NC_002512.2 + 8716 0.7 0.579422
Target:  5'- uCCGagGUCGGUCggCCGCgCGcGCCCg -3'
miRNA:   3'- -GGCagCAGCCGGgaGGUGgGCuCGGG- -5'
9185 3' -62.3 NC_002512.2 + 9001 0.67 0.754424
Target:  5'- -gGUCGUCGGCCaCgauggagaGCgCCGAGgCCCc -3'
miRNA:   3'- ggCAGCAGCCGG-Gagg-----UG-GGCUC-GGG- -5'
9185 3' -62.3 NC_002512.2 + 9128 0.68 0.697687
Target:  5'- cCCGaCGUCGGCCucgacggcccagcgCUCCAUgagguggaggUCGAaGCCCa -3'
miRNA:   3'- -GGCaGCAGCCGG--------------GAGGUG----------GGCU-CGGG- -5'
9185 3' -62.3 NC_002512.2 + 9188 0.67 0.754424
Target:  5'- cUCGUCGcagGGacugaCCUCCGuCCCGucGCCCa -3'
miRNA:   3'- -GGCAGCag-CCg----GGAGGU-GGGCu-CGGG- -5'
9185 3' -62.3 NC_002512.2 + 9197 0.66 0.796996
Target:  5'- aCCGUCGgaaCGcGCUCUUCAUcgCCGA-CCCg -3'
miRNA:   3'- -GGCAGCa--GC-CGGGAGGUG--GGCUcGGG- -5'
9185 3' -62.3 NC_002512.2 + 9497 0.72 0.471834
Target:  5'- aCGUCGUCcuguGGCgCgagcgCCACCUG-GCCCg -3'
miRNA:   3'- gGCAGCAG----CCGgGa----GGUGGGCuCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.