miRNA display CGI


Results 1 - 20 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9185 3' -62.3 NC_002512.2 + 4 0.7 0.542674
Target:  5'- cCCGUCGUgagggcCGGUCCUCCuccCCCGGGg-- -3'
miRNA:   3'- -GGCAGCA------GCCGGGAGGu--GGGCUCggg -5'
9185 3' -62.3 NC_002512.2 + 263 0.73 0.421904
Target:  5'- cCCGcCugcccuUCGGUCCccgcucccucUCCGCCCGGGCCCc -3'
miRNA:   3'- -GGCaGc-----AGCCGGG----------AGGUGGGCUCGGG- -5'
9185 3' -62.3 NC_002512.2 + 323 0.68 0.663403
Target:  5'- cCCGgCG-CGcGCuCCUCCGCCgGcGCCCc -3'
miRNA:   3'- -GGCaGCaGC-CG-GGAGGUGGgCuCGGG- -5'
9185 3' -62.3 NC_002512.2 + 1121 0.68 0.691239
Target:  5'- gCCGUC-UCGGUcgccuCCUCCGCCCu--CCCu -3'
miRNA:   3'- -GGCAGcAGCCG-----GGAGGUGGGcucGGG- -5'
9185 3' -62.3 NC_002512.2 + 1264 0.69 0.615737
Target:  5'- cUCGUCGaCGGacgacgaccggacUCCUCCACCUG-GUCCg -3'
miRNA:   3'- -GGCAGCaGCC-------------GGGAGGUGGGCuCGGG- -5'
9185 3' -62.3 NC_002512.2 + 1891 0.76 0.257457
Target:  5'- cCCGUcCGgcucCGGCCCUCgGCCCucggcgccgGGGCCCu -3'
miRNA:   3'- -GGCA-GCa---GCCGGGAGgUGGG---------CUCGGG- -5'
9185 3' -62.3 NC_002512.2 + 1971 0.68 0.653139
Target:  5'- gCGUCGgaggCGGCgcguccgUCUCCGCCuCGGacucGCCCg -3'
miRNA:   3'- gGCAGCa---GCCG-------GGAGGUGG-GCU----CGGG- -5'
9185 3' -62.3 NC_002512.2 + 2201 0.68 0.657807
Target:  5'- gCCGUCGUcgucucggucgccggCGGCgccgccgcucuuCCUCCggACCCGGGCgCu -3'
miRNA:   3'- -GGCAGCA---------------GCCG------------GGAGG--UGGGCUCGgG- -5'
9185 3' -62.3 NC_002512.2 + 2353 0.68 0.681992
Target:  5'- aCCGagcCG-CGGCCgUaCCGCCCGcucccGCCCg -3'
miRNA:   3'- -GGCa--GCaGCCGGgA-GGUGGGCu----CGGG- -5'
9185 3' -62.3 NC_002512.2 + 2370 0.67 0.754424
Target:  5'- uCCGcCGcCGGaCUCUCCccCCCGGGUCg -3'
miRNA:   3'- -GGCaGCaGCC-GGGAGGu-GGGCUCGGg -5'
9185 3' -62.3 NC_002512.2 + 2995 0.68 0.681992
Target:  5'- cCCG-CGU-GGCCCggu-CCCGGGCCUu -3'
miRNA:   3'- -GGCaGCAgCCGGGagguGGGCUCGGG- -5'
9185 3' -62.3 NC_002512.2 + 3078 0.81 0.142449
Target:  5'- gCCGUCGUCcgGGCCCgcgcCCGCgCCGGGUCCc -3'
miRNA:   3'- -GGCAGCAG--CCGGGa---GGUG-GGCUCGGG- -5'
9185 3' -62.3 NC_002512.2 + 3123 0.72 0.438199
Target:  5'- aCGUCcUC-GCCCUCCgcgucguccgGCCgGAGCCCg -3'
miRNA:   3'- gGCAGcAGcCGGGAGG----------UGGgCUCGGG- -5'
9185 3' -62.3 NC_002512.2 + 3164 0.72 0.471834
Target:  5'- gCCGUCGUC-GCCCgcggCCuCCCGucGCUCg -3'
miRNA:   3'- -GGCAGCAGcCGGGa---GGuGGGCu-CGGG- -5'
9185 3' -62.3 NC_002512.2 + 3282 0.72 0.438199
Target:  5'- gCGUCGcCGucCCCUCCuccCCCGGGCCg -3'
miRNA:   3'- gGCAGCaGCc-GGGAGGu--GGGCUCGGg -5'
9185 3' -62.3 NC_002512.2 + 3489 0.69 0.607331
Target:  5'- aCCGUCGUCa-CCCgaCGCgCCGGGUCCa -3'
miRNA:   3'- -GGCAGCAGccGGGagGUG-GGCUCGGG- -5'
9185 3' -62.3 NC_002512.2 + 3507 1.13 0.00095
Target:  5'- gCCGUCGUCGGCCCUCCACCCGAGCCCg -3'
miRNA:   3'- -GGCAGCAGCCGGGAGGUGGGCUCGGG- -5'
9185 3' -62.3 NC_002512.2 + 4059 0.68 0.668991
Target:  5'- uCCGUCGaCGGCUcgcucucgggacugCUCCGguccgacUCCGGGUCCg -3'
miRNA:   3'- -GGCAGCaGCCGG--------------GAGGU-------GGGCUCGGG- -5'
9185 3' -62.3 NC_002512.2 + 4073 0.69 0.635377
Target:  5'- cUCGagGUCccaGGCCacccggCCGCCCGcGGCCCg -3'
miRNA:   3'- -GGCagCAG---CCGGga----GGUGGGC-UCGGG- -5'
9185 3' -62.3 NC_002512.2 + 4463 0.73 0.413894
Target:  5'- gUCGgCGUCGGCCC-CaACCCGAcCCCg -3'
miRNA:   3'- -GGCaGCAGCCGGGaGgUGGGCUcGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.