miRNA display CGI


Results 1 - 20 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9185 3' -62.3 NC_002512.2 + 3507 1.13 0.00095
Target:  5'- gCCGUCGUCGGCCCUCCACCCGAGCCCg -3'
miRNA:   3'- -GGCAGCAGCCGGGAGGUGGGCUCGGG- -5'
9185 3' -62.3 NC_002512.2 + 105378 0.82 0.115063
Target:  5'- gCCGUCGUCGGCCCagacgaCCGcgcaguCCCGGGUCCg -3'
miRNA:   3'- -GGCAGCAGCCGGGa-----GGU------GGGCUCGGG- -5'
9185 3' -62.3 NC_002512.2 + 3078 0.81 0.142449
Target:  5'- gCCGUCGUCcgGGCCCgcgcCCGCgCCGGGUCCc -3'
miRNA:   3'- -GGCAGCAG--CCGGGa---GGUG-GGCUCGGG- -5'
9185 3' -62.3 NC_002512.2 + 55770 0.78 0.201516
Target:  5'- gUCGUCGUCGuucCCCgUCCACCCguuccGAGCCCu -3'
miRNA:   3'- -GGCAGCAGCc--GGG-AGGUGGG-----CUCGGG- -5'
9185 3' -62.3 NC_002512.2 + 25158 0.78 0.201516
Target:  5'- cCCGg-GUcCGGCCCcCCGcCCCGGGCCCg -3'
miRNA:   3'- -GGCagCA-GCCGGGaGGU-GGGCUCGGG- -5'
9185 3' -62.3 NC_002512.2 + 56605 0.78 0.20613
Target:  5'- uCCGUCGg-GGCCgUCUGCCCGGGCUg -3'
miRNA:   3'- -GGCAGCagCCGGgAGGUGGGCUCGGg -5'
9185 3' -62.3 NC_002512.2 + 130415 0.77 0.225511
Target:  5'- gCCGUCGcgggcCGGCCCgCCG-CCGGGCCCc -3'
miRNA:   3'- -GGCAGCa----GCCGGGaGGUgGGCUCGGG- -5'
9185 3' -62.3 NC_002512.2 + 102233 0.77 0.225511
Target:  5'- aCCGUCGgaUCGGCCaCgagcCCGCCggCGGGCCCg -3'
miRNA:   3'- -GGCAGC--AGCCGG-Ga---GGUGG--GCUCGGG- -5'
9185 3' -62.3 NC_002512.2 + 97589 0.77 0.235769
Target:  5'- gCGcCGUCGGCCuCUCCGCCCucGAcCCCg -3'
miRNA:   3'- gGCaGCAGCCGG-GAGGUGGG--CUcGGG- -5'
9185 3' -62.3 NC_002512.2 + 151918 0.77 0.245873
Target:  5'- gCCGUCGUCGGUCC-CCgagacgaACCCG-GCUCg -3'
miRNA:   3'- -GGCAGCAGCCGGGaGG-------UGGGCuCGGG- -5'
9185 3' -62.3 NC_002512.2 + 117214 0.77 0.246415
Target:  5'- gCGUCGgCGGCCCgguggCGCgCGAGCCCg -3'
miRNA:   3'- gGCAGCaGCCGGGag---GUGgGCUCGGG- -5'
9185 3' -62.3 NC_002512.2 + 127918 0.77 0.246415
Target:  5'- gCGUCGacgagguccUCGGCgCUCUguccgACCCGGGCCCg -3'
miRNA:   3'- gGCAGC---------AGCCGgGAGG-----UGGGCUCGGG- -5'
9185 3' -62.3 NC_002512.2 + 18091 0.77 0.246415
Target:  5'- gCCGcggCGggaCGGCCCccgcggCCACCCGGGCCUc -3'
miRNA:   3'- -GGCa--GCa--GCCGGGa-----GGUGGGCUCGGG- -5'
9185 3' -62.3 NC_002512.2 + 1891 0.76 0.257457
Target:  5'- cCCGUcCGgcucCGGCCCUCgGCCCucggcgccgGGGCCCu -3'
miRNA:   3'- -GGCA-GCa---GCCGGGAGgUGGG---------CUCGGG- -5'
9185 3' -62.3 NC_002512.2 + 45110 0.76 0.268318
Target:  5'- gCCGUCGUCGgggagaGCCCUaggauccuggacgCCgACCCGGGCCUc -3'
miRNA:   3'- -GGCAGCAGC------CGGGA-------------GG-UGGGCUCGGG- -5'
9185 3' -62.3 NC_002512.2 + 130511 0.76 0.2689
Target:  5'- gCgGUCGUCgcccucggagGGCCCggCGCCCGAGCCg -3'
miRNA:   3'- -GgCAGCAG----------CCGGGagGUGGGCUCGGg -5'
9185 3' -62.3 NC_002512.2 + 6962 0.76 0.274774
Target:  5'- -gGUCGUUGGCCCgCgGgCCGAGCCUc -3'
miRNA:   3'- ggCAGCAGCCGGGaGgUgGGCUCGGG- -5'
9185 3' -62.3 NC_002512.2 + 59557 0.76 0.274774
Target:  5'- uCCGUCGcCGuGUCC-CgACCCGAGUCCg -3'
miRNA:   3'- -GGCAGCaGC-CGGGaGgUGGGCUCGGG- -5'
9185 3' -62.3 NC_002512.2 + 36414 0.76 0.28075
Target:  5'- gCCGUCGUgGG-CCUCguCCCGgagGGCCCg -3'
miRNA:   3'- -GGCAGCAgCCgGGAGguGGGC---UCGGG- -5'
9185 3' -62.3 NC_002512.2 + 86501 0.76 0.28075
Target:  5'- cCCGcC-UCGGCCCUCuCcCCCGGGUCCu -3'
miRNA:   3'- -GGCaGcAGCCGGGAG-GuGGGCUCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.