miRNA display CGI


Results 21 - 40 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9185 3' -62.3 NC_002512.2 + 100317 0.75 0.293011
Target:  5'- cUCGUCGUCGGCgCCgCCGCCCccgcgucucaGcGCCCg -3'
miRNA:   3'- -GGCAGCAGCCG-GGaGGUGGG----------CuCGGG- -5'
9185 3' -62.3 NC_002512.2 + 15903 0.75 0.299297
Target:  5'- gCGgcUCGUCGGCUCgCCGCCCGcGGCCg -3'
miRNA:   3'- gGC--AGCAGCCGGGaGGUGGGC-UCGGg -5'
9185 3' -62.3 NC_002512.2 + 114203 0.75 0.299297
Target:  5'- aCCGUgcUGUaGGCCCg--GCCCGAGCCCa -3'
miRNA:   3'- -GGCA--GCAgCCGGGaggUGGGCUCGGG- -5'
9185 3' -62.3 NC_002512.2 + 124511 0.75 0.305686
Target:  5'- gCCGUCGUCGG-UCUCCgagACCCG-GCCg -3'
miRNA:   3'- -GGCAGCAGCCgGGAGG---UGGGCuCGGg -5'
9185 3' -62.3 NC_002512.2 + 126544 0.75 0.31218
Target:  5'- aCCGUgcCGUCcGCCCcgggcuacgCCGCCCGGGCCUc -3'
miRNA:   3'- -GGCA--GCAGcCGGGa--------GGUGGGCUCGGG- -5'
9185 3' -62.3 NC_002512.2 + 137143 0.75 0.325479
Target:  5'- cCCGUCGUCGGCgCCaUCgGaCCGAGCgCg -3'
miRNA:   3'- -GGCAGCAGCCG-GG-AGgUgGGCUCGgG- -5'
9185 3' -62.3 NC_002512.2 + 73461 0.75 0.325479
Target:  5'- aCG-CGUaCGGCCCUgCCACCUG-GCCUa -3'
miRNA:   3'- gGCaGCA-GCCGGGA-GGUGGGCuCGGG- -5'
9185 3' -62.3 NC_002512.2 + 18153 0.74 0.330232
Target:  5'- gCCGUCGUCcucggGGCCgCcgccgccuaucacgUCC-CCCGGGCCCu -3'
miRNA:   3'- -GGCAGCAG-----CCGG-G--------------AGGuGGGCUCGGG- -5'
9185 3' -62.3 NC_002512.2 + 86391 0.74 0.330232
Target:  5'- gCCGcggCGUCGGCuuccagguccgcgaCCUCCuccgcGCCCGGGUCCa -3'
miRNA:   3'- -GGCa--GCAGCCG--------------GGAGG-----UGGGCUCGGG- -5'
9185 3' -62.3 NC_002512.2 + 82198 0.74 0.332285
Target:  5'- aCCGcgCGcCGGcCCCUCCGCCCucGCCg -3'
miRNA:   3'- -GGCa-GCaGCC-GGGAGGUGGGcuCGGg -5'
9185 3' -62.3 NC_002512.2 + 30430 0.74 0.332285
Target:  5'- gUCGUCG-CGGCCCUgaACgCGGGCCUg -3'
miRNA:   3'- -GGCAGCaGCCGGGAggUGgGCUCGGG- -5'
9185 3' -62.3 NC_002512.2 + 9743 0.74 0.332285
Target:  5'- gCCGUCGUCuaCCCgCCGCUCGcgGGCCCg -3'
miRNA:   3'- -GGCAGCAGccGGGaGGUGGGC--UCGGG- -5'
9185 3' -62.3 NC_002512.2 + 154341 0.74 0.339195
Target:  5'- gCGUCGUC-GUCCUCCGCCaCGGcgucgaggguGCCCg -3'
miRNA:   3'- gGCAGCAGcCGGGAGGUGG-GCU----------CGGG- -5'
9185 3' -62.3 NC_002512.2 + 72732 0.74 0.339195
Target:  5'- aCGcCGccCGGCCCgccgcCCGcCCCGGGCCCg -3'
miRNA:   3'- gGCaGCa-GCCGGGa----GGU-GGGCUCGGG- -5'
9185 3' -62.3 NC_002512.2 + 20108 0.74 0.345502
Target:  5'- gCCGUacCGUCGcGCCUUCCGCuCCGgggacgucgaccuGGCCCu -3'
miRNA:   3'- -GGCA--GCAGC-CGGGAGGUG-GGC-------------UCGGG- -5'
9185 3' -62.3 NC_002512.2 + 45580 0.74 0.346208
Target:  5'- gCCGgCGgaCGGCCCUCCgACCCGcgGGCCg -3'
miRNA:   3'- -GGCaGCa-GCCGGGAGG-UGGGC--UCGGg -5'
9185 3' -62.3 NC_002512.2 + 101757 0.74 0.346208
Target:  5'- cCCGUCGcCGGCggcggaCC-CCGuCUCGAGCCCg -3'
miRNA:   3'- -GGCAGCaGCCG------GGaGGU-GGGCUCGGG- -5'
9185 3' -62.3 NC_002512.2 + 30870 0.74 0.353325
Target:  5'- aUGUCGggCGGCCCgaaCAUCCGcGCCCu -3'
miRNA:   3'- gGCAGCa-GCCGGGag-GUGGGCuCGGG- -5'
9185 3' -62.3 NC_002512.2 + 40472 0.74 0.360545
Target:  5'- aCCGgCGUCGGCCCUacuggUACCgGcGGCCCu -3'
miRNA:   3'- -GGCaGCAGCCGGGAg----GUGGgC-UCGGG- -5'
9185 3' -62.3 NC_002512.2 + 97430 0.74 0.367867
Target:  5'- gCGUCGUgGGCgagauCCUCgGCCCGuGCCg -3'
miRNA:   3'- gGCAGCAgCCG-----GGAGgUGGGCuCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.