miRNA display CGI


Results 21 - 40 of 379 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9185 3' -62.3 NC_002512.2 + 84809 0.66 0.796172
Target:  5'- aCGUCGaggUCGaGCgCCUcgccgcgCCGCCCGAcGCCg -3'
miRNA:   3'- gGCAGC---AGC-CG-GGA-------GGUGGGCU-CGGg -5'
9185 3' -62.3 NC_002512.2 + 10959 0.66 0.792035
Target:  5'- gCCGcCGUCGGCuaccgcuuCCUgUACCCGcugcacugccgggccGGCCUc -3'
miRNA:   3'- -GGCaGCAGCCG--------GGAgGUGGGC---------------UCGGG- -5'
9185 3' -62.3 NC_002512.2 + 80383 0.66 0.788703
Target:  5'- uCCGgcCG-CGGCCUUuugaCCACCCGccCCCg -3'
miRNA:   3'- -GGCa-GCaGCCGGGA----GGUGGGCucGGG- -5'
9185 3' -62.3 NC_002512.2 + 73982 0.66 0.788703
Target:  5'- aCG-CGUCGGCgCCggacucgUC-CCCGcGCCCg -3'
miRNA:   3'- gGCaGCAGCCG-GGa------GGuGGGCuCGGG- -5'
9185 3' -62.3 NC_002512.2 + 4523 0.66 0.788703
Target:  5'- gUCGUCGUcCGGUCCgacgaccuguaUCC-CCCGAaccaCCCg -3'
miRNA:   3'- -GGCAGCA-GCCGGG-----------AGGuGGGCUc---GGG- -5'
9185 3' -62.3 NC_002512.2 + 130919 0.66 0.788703
Target:  5'- cCCGUCc-CGGUCCUCgGa--GAGCCCc -3'
miRNA:   3'- -GGCAGcaGCCGGGAGgUgggCUCGGG- -5'
9185 3' -62.3 NC_002512.2 + 16665 0.66 0.788703
Target:  5'- gCCGUUGgCGGCCa-CgACCCGgcGGUCCc -3'
miRNA:   3'- -GGCAGCaGCCGGgaGgUGGGC--UCGGG- -5'
9185 3' -62.3 NC_002512.2 + 69113 0.66 0.788703
Target:  5'- gCUG-CGcCGGCCCcgcuccgggaccUCCguGCCCGGGgCCg -3'
miRNA:   3'- -GGCaGCaGCCGGG------------AGG--UGGGCUCgGG- -5'
9185 3' -62.3 NC_002512.2 + 61730 0.66 0.788703
Target:  5'- gCCG-CGUCcccucuccGCCCcCCACCCccAGCCCc -3'
miRNA:   3'- -GGCaGCAGc-------CGGGaGGUGGGc-UCGGG- -5'
9185 3' -62.3 NC_002512.2 + 142302 0.66 0.786192
Target:  5'- gCCGggCGUCgGGCCCUCgCGgcgggucgccggccCCCG-GCCg -3'
miRNA:   3'- -GGCa-GCAG-CCGGGAG-GU--------------GGGCuCGGg -5'
9185 3' -62.3 NC_002512.2 + 137999 0.66 0.780293
Target:  5'- gCCGUgCGcCGcGCCg-CCGCCCGcGCCg -3'
miRNA:   3'- -GGCA-GCaGC-CGGgaGGUGGGCuCGGg -5'
9185 3' -62.3 NC_002512.2 + 83804 0.66 0.780293
Target:  5'- aCCG-CGUCGGgCgCgCCGgcggcggcggcUCCGGGCCCg -3'
miRNA:   3'- -GGCaGCAGCCgG-GaGGU-----------GGGCUCGGG- -5'
9185 3' -62.3 NC_002512.2 + 42887 0.66 0.780293
Target:  5'- cCCG-CGUacaGGCCCgCCGCgU-AGCCCa -3'
miRNA:   3'- -GGCaGCAg--CCGGGaGGUGgGcUCGGG- -5'
9185 3' -62.3 NC_002512.2 + 45712 0.66 0.780293
Target:  5'- uCCGUCGccUCGGCCg-CCGCCgGcGUCg -3'
miRNA:   3'- -GGCAGC--AGCCGGgaGGUGGgCuCGGg -5'
9185 3' -62.3 NC_002512.2 + 105024 0.66 0.780293
Target:  5'- cCCGguucUCGUCcgGGUCCUCguCgCGGGCCUc -3'
miRNA:   3'- -GGC----AGCAG--CCGGGAGguGgGCUCGGG- -5'
9185 3' -62.3 NC_002512.2 + 105511 0.66 0.780293
Target:  5'- aUGUCGcUGGCCCUgUgGCCCGAGaagaggCCg -3'
miRNA:   3'- gGCAGCaGCCGGGA-GgUGGGCUCg-----GG- -5'
9185 3' -62.3 NC_002512.2 + 36686 0.66 0.780293
Target:  5'- gCCGguggCGggagCgGGCCCUCCGggaCGAGgCCCa -3'
miRNA:   3'- -GGCa---GCa---G-CCGGGAGGUgg-GCUC-GGG- -5'
9185 3' -62.3 NC_002512.2 + 93549 0.66 0.780293
Target:  5'- aCGUC-UCGGaCCCccugugcacggUCCgcauGCCCGuGCCCc -3'
miRNA:   3'- gGCAGcAGCC-GGG-----------AGG----UGGGCuCGGG- -5'
9185 3' -62.3 NC_002512.2 + 41437 0.66 0.780293
Target:  5'- aCGg---CGGCuCCUCCGCCUcGGCCa -3'
miRNA:   3'- gGCagcaGCCG-GGAGGUGGGcUCGGg -5'
9185 3' -62.3 NC_002512.2 + 11319 0.66 0.780293
Target:  5'- uCCGUC-UC-GCCCUCCGC---GGCCCu -3'
miRNA:   3'- -GGCAGcAGcCGGGAGGUGggcUCGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.