miRNA display CGI


Results 41 - 60 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9185 3' -62.3 NC_002512.2 + 137999 0.66 0.780293
Target:  5'- gCCGUgCGcCGcGCCg-CCGCCCGcGCCg -3'
miRNA:   3'- -GGCA-GCaGC-CGGgaGGUGGGCuCGGg -5'
9185 3' -62.3 NC_002512.2 + 126699 0.66 0.771772
Target:  5'- gCGUCGUccCGGUCCga-GCgCGGGUCCg -3'
miRNA:   3'- gGCAGCA--GCCGGGaggUGgGCUCGGG- -5'
9185 3' -62.3 NC_002512.2 + 140710 0.66 0.771772
Target:  5'- cUCGggCGUCGGCggggUCACguCCGGGCCCa -3'
miRNA:   3'- -GGCa-GCAGCCGgga-GGUG--GGCUCGGG- -5'
9185 3' -62.3 NC_002512.2 + 141265 0.66 0.771772
Target:  5'- aCCGUgGUCcccGUCCUCCccgcgcuccccCCCGuGCCCc -3'
miRNA:   3'- -GGCAgCAGc--CGGGAGGu----------GGGCuCGGG- -5'
9185 3' -62.3 NC_002512.2 + 76508 0.66 0.771772
Target:  5'- aCGUCGcucCGGaCCgccagccgCCGCCC-AGCCCa -3'
miRNA:   3'- gGCAGCa--GCCgGGa-------GGUGGGcUCGGG- -5'
9185 3' -62.3 NC_002512.2 + 82196 0.66 0.771772
Target:  5'- uCCGcCGUCGGgCCggcgUCCuCCCGGGgCg -3'
miRNA:   3'- -GGCaGCAGCCgGG----AGGuGGGCUCgGg -5'
9185 3' -62.3 NC_002512.2 + 30927 0.66 0.770914
Target:  5'- uUGUCGUCcGaCCgcgCCGCCCGguagauccggcgcAGCCCg -3'
miRNA:   3'- gGCAGCAGcCgGGa--GGUGGGC-------------UCGGG- -5'
9185 3' -62.3 NC_002512.2 + 114013 0.66 0.770055
Target:  5'- gUCGUCGUCcggcgGGCCCgccucggcgaaCGCCUcgaggcagGGGCCCg -3'
miRNA:   3'- -GGCAGCAG-----CCGGGag---------GUGGG--------CUCGGG- -5'
9185 3' -62.3 NC_002512.2 + 103158 0.66 0.766609
Target:  5'- -gGUcCG-CGGUCCUCUcccagcgcgggucguACCCGGGUCCc -3'
miRNA:   3'- ggCA-GCaGCCGGGAGG---------------UGGGCUCGGG- -5'
9185 3' -62.3 NC_002512.2 + 105167 0.66 0.766609
Target:  5'- gCCGUCG-CGGacuucgccaaccuguCCCUggACCCG-GCCCc -3'
miRNA:   3'- -GGCAGCaGCC---------------GGGAggUGGGCuCGGG- -5'
9185 3' -62.3 NC_002512.2 + 83416 0.66 0.763147
Target:  5'- gCGgggCGgCGGCCgCggCCG-CCGGGCCCg -3'
miRNA:   3'- gGCa--GCaGCCGG-Ga-GGUgGGCUCGGG- -5'
9185 3' -62.3 NC_002512.2 + 9872 0.66 0.763147
Target:  5'- gCCGagaaccucaaguUCGUCGGCagCUUCCugCCcgccGAGCCg -3'
miRNA:   3'- -GGC------------AGCAGCCG--GGAGGugGG----CUCGGg -5'
9185 3' -62.3 NC_002512.2 + 56833 0.66 0.763147
Target:  5'- gCCGUCaUCGGCUCcaacgCCGCCUGcggggucuucGGUCCc -3'
miRNA:   3'- -GGCAGcAGCCGGGa----GGUGGGC----------UCGGG- -5'
9185 3' -62.3 NC_002512.2 + 57291 0.66 0.763147
Target:  5'- cCCgGUCGUCGGacgcggCCUCCGCUCcc-CCCg -3'
miRNA:   3'- -GG-CAGCAGCCg-----GGAGGUGGGcucGGG- -5'
9185 3' -62.3 NC_002512.2 + 7486 0.66 0.763147
Target:  5'- cCCGcCGaagccgCGGCgCUCCAUgaggagCCaGAGCCCg -3'
miRNA:   3'- -GGCaGCa-----GCCGgGAGGUG------GG-CUCGGG- -5'
9185 3' -62.3 NC_002512.2 + 68181 0.66 0.763147
Target:  5'- cCCGUCGcCGGCCgcguCUCCAucuuCCaCGcGCCa -3'
miRNA:   3'- -GGCAGCaGCCGG----GAGGU----GG-GCuCGGg -5'
9185 3' -62.3 NC_002512.2 + 54272 0.66 0.763147
Target:  5'- gCGUCGgcgacccUGGCaCC-CCACCCGAagGaCCCg -3'
miRNA:   3'- gGCAGCa------GCCG-GGaGGUGGGCU--C-GGG- -5'
9185 3' -62.3 NC_002512.2 + 27866 0.66 0.763147
Target:  5'- aCCGgCGggggaccCGGCCCcgCCACCuguccgagaCGAGCCa -3'
miRNA:   3'- -GGCaGCa------GCCGGGa-GGUGG---------GCUCGGg -5'
9185 3' -62.3 NC_002512.2 + 123498 0.66 0.763147
Target:  5'- gCCgGUCGUCGaGCUCgaagaAgUCGAGCCCg -3'
miRNA:   3'- -GG-CAGCAGC-CGGGagg--UgGGCUCGGG- -5'
9185 3' -62.3 NC_002512.2 + 25934 0.66 0.763147
Target:  5'- aUGUgCGUCGGCCgggggCCACgaGGGCCUc -3'
miRNA:   3'- gGCA-GCAGCCGGga---GGUGggCUCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.