miRNA display CGI


Results 1 - 20 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9185 3' -62.3 NC_002512.2 + 3507 1.13 0.00095
Target:  5'- gCCGUCGUCGGCCCUCCACCCGAGCCCg -3'
miRNA:   3'- -GGCAGCAGCCGGGAGGUGGGCUCGGG- -5'
9185 3' -62.3 NC_002512.2 + 99105 0.73 0.421904
Target:  5'- gCGUCGgCGGCCCUCCucguggUCCGcGCCg -3'
miRNA:   3'- gGCAGCaGCCGGGAGGu-----GGGCuCGGg -5'
9185 3' -62.3 NC_002512.2 + 229666 0.73 0.421904
Target:  5'- cCCGcCugcccuUCGGUCCccgcucccucUCCGCCCGGGCCCc -3'
miRNA:   3'- -GGCaGc-----AGCCGGG----------AGGUGGGCUCGGG- -5'
9185 3' -62.3 NC_002512.2 + 127562 0.66 0.805164
Target:  5'- cUCGUCGUCcgggaGGCCCgacggaccgUCCGCgaCGucGCCCu -3'
miRNA:   3'- -GGCAGCAG-----CCGGG---------AGGUGg-GCu-CGGG- -5'
9185 3' -62.3 NC_002512.2 + 18091 0.77 0.246415
Target:  5'- gCCGcggCGggaCGGCCCccgcggCCACCCGGGCCUc -3'
miRNA:   3'- -GGCa--GCa--GCCGGGa-----GGUGGGCUCGGG- -5'
9185 3' -62.3 NC_002512.2 + 1891 0.76 0.257457
Target:  5'- cCCGUcCGgcucCGGCCCUCgGCCCucggcgccgGGGCCCu -3'
miRNA:   3'- -GGCA-GCa---GCCGGGAGgUGGG---------CUCGGG- -5'
9185 3' -62.3 NC_002512.2 + 36414 0.76 0.28075
Target:  5'- gCCGUCGUgGG-CCUCguCCCGgagGGCCCg -3'
miRNA:   3'- -GGCAGCAgCCgGGAGguGGGC---UCGGG- -5'
9185 3' -62.3 NC_002512.2 + 114203 0.75 0.299297
Target:  5'- aCCGUgcUGUaGGCCCg--GCCCGAGCCCa -3'
miRNA:   3'- -GGCA--GCAgCCGGGaggUGGGCUCGGG- -5'
9185 3' -62.3 NC_002512.2 + 30430 0.74 0.332285
Target:  5'- gUCGUCG-CGGCCCUgaACgCGGGCCUg -3'
miRNA:   3'- -GGCAGCaGCCGGGAggUGgGCUCGGG- -5'
9185 3' -62.3 NC_002512.2 + 81425 0.73 0.421904
Target:  5'- gCCGUCG-CGGCuCCgUCCcgcgggggGCCCG-GCCCc -3'
miRNA:   3'- -GGCAGCaGCCG-GG-AGG--------UGGGCuCGGG- -5'
9185 3' -62.3 NC_002512.2 + 72732 0.74 0.339195
Target:  5'- aCGcCGccCGGCCCgccgcCCGcCCCGGGCCCg -3'
miRNA:   3'- gGCaGCa-GCCGGGa----GGU-GGGCUCGGG- -5'
9185 3' -62.3 NC_002512.2 + 137143 0.75 0.325479
Target:  5'- cCCGUCGUCGGCgCCaUCgGaCCGAGCgCg -3'
miRNA:   3'- -GGCAGCAGCCG-GG-AGgUgGGCUCGgG- -5'
9185 3' -62.3 NC_002512.2 + 55770 0.78 0.201516
Target:  5'- gUCGUCGUCGuucCCCgUCCACCCguuccGAGCCCu -3'
miRNA:   3'- -GGCAGCAGCc--GGG-AGGUGGG-----CUCGGG- -5'
9185 3' -62.3 NC_002512.2 + 86189 0.73 0.405979
Target:  5'- -gGagGUCGcGCCCUCCguGCCCGAcaccccGCCCg -3'
miRNA:   3'- ggCagCAGC-CGGGAGG--UGGGCU------CGGG- -5'
9185 3' -62.3 NC_002512.2 + 25158 0.78 0.201516
Target:  5'- cCCGg-GUcCGGCCCcCCGcCCCGGGCCCg -3'
miRNA:   3'- -GGCagCA-GCCGGGaGGU-GGGCUCGGG- -5'
9185 3' -62.3 NC_002512.2 + 126544 0.75 0.31218
Target:  5'- aCCGUgcCGUCcGCCCcgggcuacgCCGCCCGGGCCUc -3'
miRNA:   3'- -GGCA--GCAGcCGGGa--------GGUGGGCUCGGG- -5'
9185 3' -62.3 NC_002512.2 + 4463 0.73 0.413894
Target:  5'- gUCGgCGUCGGCCC-CaACCCGAcCCCg -3'
miRNA:   3'- -GGCaGCAGCCGGGaGgUGGGCUcGGG- -5'
9185 3' -62.3 NC_002512.2 + 263 0.73 0.421904
Target:  5'- cCCGcCugcccuUCGGUCCccgcucccucUCCGCCCGGGCCCc -3'
miRNA:   3'- -GGCaGc-----AGCCGGG----------AGGUGGGCUCGGG- -5'
9185 3' -62.3 NC_002512.2 + 151918 0.77 0.245873
Target:  5'- gCCGUCGUCGGUCC-CCgagacgaACCCG-GCUCg -3'
miRNA:   3'- -GGCAGCAGCCGGGaGG-------UGGGCuCGGG- -5'
9185 3' -62.3 NC_002512.2 + 6962 0.76 0.274774
Target:  5'- -gGUCGUUGGCCCgCgGgCCGAGCCUc -3'
miRNA:   3'- ggCAGCAGCCGGGaGgUgGGCUCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.