miRNA display CGI


Results 1 - 20 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9185 3' -62.3 NC_002512.2 + 127562 0.66 0.805164
Target:  5'- cUCGUCGUCcgggaGGCCCgacggaccgUCCGCgaCGucGCCCu -3'
miRNA:   3'- -GGCAGCAG-----CCGGG---------AGGUGg-GCu-CGGG- -5'
9185 3' -62.3 NC_002512.2 + 130919 0.66 0.788703
Target:  5'- cCCGUCc-CGGUCCUCgGa--GAGCCCc -3'
miRNA:   3'- -GGCAGcaGCCGGGAGgUgggCUCGGG- -5'
9185 3' -62.3 NC_002512.2 + 142302 0.66 0.786192
Target:  5'- gCCGggCGUCgGGCCCUCgCGgcgggucgccggccCCCG-GCCg -3'
miRNA:   3'- -GGCa-GCAG-CCGGGAG-GU--------------GGGCuCGGg -5'
9185 3' -62.3 NC_002512.2 + 45712 0.66 0.780293
Target:  5'- uCCGUCGccUCGGCCg-CCGCCgGcGUCg -3'
miRNA:   3'- -GGCAGC--AGCCGGgaGGUGGgCuCGGg -5'
9185 3' -62.3 NC_002512.2 + 105511 0.66 0.780293
Target:  5'- aUGUCGcUGGCCCUgUgGCCCGAGaagaggCCg -3'
miRNA:   3'- gGCAGCaGCCGGGA-GgUGGGCUCg-----GG- -5'
9185 3' -62.3 NC_002512.2 + 11319 0.66 0.780293
Target:  5'- uCCGUC-UC-GCCCUCCGC---GGCCCu -3'
miRNA:   3'- -GGCAGcAGcCGGGAGGUGggcUCGGG- -5'
9185 3' -62.3 NC_002512.2 + 41437 0.66 0.780293
Target:  5'- aCGg---CGGCuCCUCCGCCUcGGCCa -3'
miRNA:   3'- gGCagcaGCCG-GGAGGUGGGcUCGGg -5'
9185 3' -62.3 NC_002512.2 + 93549 0.66 0.780293
Target:  5'- aCGUC-UCGGaCCCccugugcacggUCCgcauGCCCGuGCCCc -3'
miRNA:   3'- gGCAGcAGCC-GGG-----------AGG----UGGGCuCGGG- -5'
9185 3' -62.3 NC_002512.2 + 36686 0.66 0.780293
Target:  5'- gCCGguggCGggagCgGGCCCUCCGggaCGAGgCCCa -3'
miRNA:   3'- -GGCa---GCa---G-CCGGGAGGUgg-GCUC-GGG- -5'
9185 3' -62.3 NC_002512.2 + 4523 0.66 0.788703
Target:  5'- gUCGUCGUcCGGUCCgacgaccuguaUCC-CCCGAaccaCCCg -3'
miRNA:   3'- -GGCAGCA-GCCGGG-----------AGGuGGGCUc---GGG- -5'
9185 3' -62.3 NC_002512.2 + 10959 0.66 0.792035
Target:  5'- gCCGcCGUCGGCuaccgcuuCCUgUACCCGcugcacugccgggccGGCCUc -3'
miRNA:   3'- -GGCaGCAGCCG--------GGAgGUGGGC---------------UCGGG- -5'
9185 3' -62.3 NC_002512.2 + 84809 0.66 0.796172
Target:  5'- aCGUCGaggUCGaGCgCCUcgccgcgCCGCCCGAcGCCg -3'
miRNA:   3'- gGCAGC---AGC-CG-GGA-------GGUGGGCU-CGGg -5'
9185 3' -62.3 NC_002512.2 + 116954 0.66 0.802727
Target:  5'- aCCGgCGUC-GCCgUCCGCuccgcgagcgggagCCGGGUCCu -3'
miRNA:   3'- -GGCaGCAGcCGGgAGGUG--------------GGCUCGGG- -5'
9185 3' -62.3 NC_002512.2 + 19643 0.66 0.797818
Target:  5'- uCCGcgaggCGagGGCCCgacgcgagcgcgaggCCG-CCGAGCCCc -3'
miRNA:   3'- -GGCa----GCagCCGGGa--------------GGUgGGCUCGGG- -5'
9185 3' -62.3 NC_002512.2 + 82676 0.66 0.796996
Target:  5'- cCCcUCGUC--CCCUCCGCCgCGGGaCCa -3'
miRNA:   3'- -GGcAGCAGccGGGAGGUGG-GCUCgGG- -5'
9185 3' -62.3 NC_002512.2 + 9197 0.66 0.796996
Target:  5'- aCCGUCGgaaCGcGCUCUUCAUcgCCGA-CCCg -3'
miRNA:   3'- -GGCAGCa--GC-CGGGAGGUG--GGCUcGGG- -5'
9185 3' -62.3 NC_002512.2 + 68235 0.66 0.796996
Target:  5'- cUCG-CGcCGGCCCUCC-UCCGGcggacGCCa -3'
miRNA:   3'- -GGCaGCaGCCGGGAGGuGGGCU-----CGGg -5'
9185 3' -62.3 NC_002512.2 + 119336 0.66 0.796996
Target:  5'- uCCGcCG-CGauGUUCUCCucCCCGAGUCCg -3'
miRNA:   3'- -GGCaGCaGC--CGGGAGGu-GGGCUCGGG- -5'
9185 3' -62.3 NC_002512.2 + 25112 0.66 0.796996
Target:  5'- uCgGUCGg-GGCCgCgUCCGCCgccgaccggccgCGGGCCCg -3'
miRNA:   3'- -GgCAGCagCCGG-G-AGGUGG------------GCUCGGG- -5'
9185 3' -62.3 NC_002512.2 + 58216 0.66 0.796996
Target:  5'- uUCGUCGcccUCuucGCCCgCCGCgCCGcGCCCg -3'
miRNA:   3'- -GGCAGC---AGc--CGGGaGGUG-GGCuCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.