miRNA display CGI


Results 1 - 20 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9185 3' -62.3 NC_002512.2 + 229726 0.68 0.663403
Target:  5'- cCCGgCG-CGcGCuCCUCCGCCgGcGCCCc -3'
miRNA:   3'- -GGCaGCaGC-CG-GGAGGUGGgCuCGGG- -5'
9185 3' -62.3 NC_002512.2 + 229666 0.73 0.421904
Target:  5'- cCCGcCugcccuUCGGUCCccgcucccucUCCGCCCGGGCCCc -3'
miRNA:   3'- -GGCaGc-----AGCCGGG----------AGGUGGGCUCGGG- -5'
9185 3' -62.3 NC_002512.2 + 229408 0.7 0.542674
Target:  5'- cCCGUCGUgagggcCGGUCCUCCuccCCCGGGg-- -3'
miRNA:   3'- -GGCAGCA------GCCGGGAGGu--GGGCUCggg -5'
9185 3' -62.3 NC_002512.2 + 227354 0.67 0.745612
Target:  5'- uCCGUCGUCGccGCCUcguucgccCCACCUGuGUCUc -3'
miRNA:   3'- -GGCAGCAGC--CGGGa-------GGUGGGCuCGGG- -5'
9185 3' -62.3 NC_002512.2 + 220999 0.67 0.709601
Target:  5'- aCCGUCcUCGa---UCUACCCGAGCCUc -3'
miRNA:   3'- -GGCAGcAGCcgggAGGUGGGCUCGGG- -5'
9185 3' -62.3 NC_002512.2 + 194941 0.67 0.745612
Target:  5'- aCCgGUCGUUGGUCCugaugUCCGCCCucGCg- -3'
miRNA:   3'- -GG-CAGCAGCCGGG-----AGGUGGGcuCGgg -5'
9185 3' -62.3 NC_002512.2 + 192953 0.68 0.663403
Target:  5'- aCGUCgGUCGGaCUCaagaUCgCAUCCGAGCCg -3'
miRNA:   3'- gGCAG-CAGCC-GGG----AG-GUGGGCUCGGg -5'
9185 3' -62.3 NC_002512.2 + 192513 0.69 0.607331
Target:  5'- aCGUUGUCGGCgaCUCgGCgaaccaaaCCGAaGCCCg -3'
miRNA:   3'- gGCAGCAGCCGg-GAGgUG--------GGCU-CGGG- -5'
9185 3' -62.3 NC_002512.2 + 155542 0.69 0.644729
Target:  5'- gCCGgggcccucCGUCGGCUCgagCCGCCucggcucccgCGAGCCg -3'
miRNA:   3'- -GGCa-------GCAGCCGGGa--GGUGG----------GCUCGGg -5'
9185 3' -62.3 NC_002512.2 + 155261 0.67 0.742063
Target:  5'- gCGUCGaCGGCUCgcgggagccgaggCgGCUCGAGCCg -3'
miRNA:   3'- gGCAGCaGCCGGGa------------GgUGGGCUCGGg -5'
9185 3' -62.3 NC_002512.2 + 154341 0.74 0.339195
Target:  5'- gCGUCGUC-GUCCUCCGCCaCGGcgucgaggguGCCCg -3'
miRNA:   3'- gGCAGCAGcCGGGAGGUGG-GCU----------CGGG- -5'
9185 3' -62.3 NC_002512.2 + 153427 0.67 0.709601
Target:  5'- aCUGUCGgaacggcagCGGCCgUUCCgagACCUG-GCCCg -3'
miRNA:   3'- -GGCAGCa--------GCCGG-GAGG---UGGGCuCGGG- -5'
9185 3' -62.3 NC_002512.2 + 153051 0.69 0.616671
Target:  5'- gCCGUCGccgCGGaCCUCCGagaCgGAGgCCCg -3'
miRNA:   3'- -GGCAGCa--GCCgGGAGGUg--GgCUC-GGG- -5'
9185 3' -62.3 NC_002512.2 + 152772 0.68 0.660606
Target:  5'- gCCGUCGcCGaGaCCCcgaccccggaacgcUCCACCCGuGGCgCCg -3'
miRNA:   3'- -GGCAGCaGC-C-GGG--------------AGGUGGGC-UCG-GG- -5'
9185 3' -62.3 NC_002512.2 + 151918 0.77 0.245873
Target:  5'- gCCGUCGUCGGUCC-CCgagacgaACCCG-GCUCg -3'
miRNA:   3'- -GGCAGCAGCCGGGaGG-------UGGGCuCGGG- -5'
9185 3' -62.3 NC_002512.2 + 148085 0.69 0.585914
Target:  5'- gCGgcgCGUCGGCCCUcguggcuagagucgCgAUCUGAGCCg -3'
miRNA:   3'- gGCa--GCAGCCGGGA--------------GgUGGGCUCGGg -5'
9185 3' -62.3 NC_002512.2 + 142302 0.66 0.786192
Target:  5'- gCCGggCGUCgGGCCCUCgCGgcgggucgccggccCCCG-GCCg -3'
miRNA:   3'- -GGCa-GCAG-CCGGGAG-GU--------------GGGCuCGGg -5'
9185 3' -62.3 NC_002512.2 + 142050 0.67 0.709601
Target:  5'- gCCG-CGagGGCCCgaCGCCCG-GCCg -3'
miRNA:   3'- -GGCaGCagCCGGGagGUGGGCuCGGg -5'
9185 3' -62.3 NC_002512.2 + 141265 0.66 0.771772
Target:  5'- aCCGUgGUCcccGUCCUCCccgcgcuccccCCCGuGCCCc -3'
miRNA:   3'- -GGCAgCAGc--CGGGAGGu----------GGGCuCGGG- -5'
9185 3' -62.3 NC_002512.2 + 140710 0.66 0.771772
Target:  5'- cUCGggCGUCGGCggggUCACguCCGGGCCCa -3'
miRNA:   3'- -GGCa-GCAGCCGgga-GGUG--GGCUCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.