Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9185 | 5' | -54.3 | NC_002512.2 | + | 28275 | 0.66 | 0.985462 |
Target: 5'- uGggGCCUGcGGUccGAGGAcggcggcggcuucUCCGUCUc -3' miRNA: 3'- gCuuCGGGC-CCAu-CUUCU-------------AGGCAGAc -5' |
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9185 | 5' | -54.3 | NC_002512.2 | + | 28202 | 0.71 | 0.861726 |
Target: 5'- gCGAcgGGCCCGGGUacguGGGAGA-CCGcUCUc -3' miRNA: 3'- -GCU--UCGGGCCCA----UCUUCUaGGC-AGAc -5' |
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9185 | 5' | -54.3 | NC_002512.2 | + | 32808 | 0.7 | 0.894473 |
Target: 5'- gCGgcGCCCGGcGgcuggAGAAGAUCCcccacugcccgcacGUCUGc -3' miRNA: 3'- -GCuuCGGGCC-Ca----UCUUCUAGG--------------CAGAC- -5' |
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9185 | 5' | -54.3 | NC_002512.2 | + | 33515 | 0.7 | 0.896402 |
Target: 5'- cCGGuucGCCCGGGUGGccGAcgCCGUgUGu -3' miRNA: 3'- -GCUu--CGGGCCCAUCuuCUa-GGCAgAC- -5' |
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9185 | 5' | -54.3 | NC_002512.2 | + | 135192 | 0.69 | 0.908754 |
Target: 5'- cCGGAGCCCccGGaGGAAGAUCCGa--- -3' miRNA: 3'- -GCUUCGGGc-CCaUCUUCUAGGCagac -5' |
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9185 | 5' | -54.3 | NC_002512.2 | + | 25420 | 0.69 | 0.914593 |
Target: 5'- aCGGcgGGCCCGGGgcGggGggCCGg--- -3' miRNA: 3'- -GCU--UCGGGCCCauCuuCuaGGCagac -5' |
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9185 | 5' | -54.3 | NC_002512.2 | + | 29465 | 0.69 | 0.914593 |
Target: 5'- cCGgcGUUCGGGUAGAAGGUguacucggUCGUCUc -3' miRNA: 3'- -GCuuCGGGCCCAUCUUCUA--------GGCAGAc -5' |
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9185 | 5' | -54.3 | NC_002512.2 | + | 121705 | 0.69 | 0.920203 |
Target: 5'- cCGggGCCgGGGgccGGggGGUCCcUCc- -3' miRNA: 3'- -GCuuCGGgCCCa--UCuuCUAGGcAGac -5' |
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9185 | 5' | -54.3 | NC_002512.2 | + | 3766 | 0.67 | 0.960473 |
Target: 5'- cCGcGGGCUCGGGUGGAGGG-CCGa--- -3' miRNA: 3'- -GC-UUCGGGCCCAUCUUCUaGGCagac -5' |
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9185 | 5' | -54.3 | NC_002512.2 | + | 10261 | 0.67 | 0.962857 |
Target: 5'- aCGAGGCCgGGGUcGGAGAcgagccgaccgcccUCCucucgucucgucGUCUGg -3' miRNA: 3'- -GCUUCGGgCCCAuCUUCU--------------AGG------------CAGAC- -5' |
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9185 | 5' | -54.3 | NC_002512.2 | + | 3268 | 0.67 | 0.963847 |
Target: 5'- gGAGGCCCGGGaggccaGGAAGGcCCGg--- -3' miRNA: 3'- gCUUCGGGCCCa-----UCUUCUaGGCagac -5' |
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9185 | 5' | -54.3 | NC_002512.2 | + | 229939 | 0.67 | 0.969981 |
Target: 5'- aGggGCCCGGGcggAGAGGGagCGg--- -3' miRNA: 3'- gCuuCGGGCCCa--UCUUCUagGCagac -5' |
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9185 | 5' | -54.3 | NC_002512.2 | + | 536 | 0.67 | 0.969981 |
Target: 5'- aGggGCCCGGGcggAGAGGGagCGg--- -3' miRNA: 3'- gCuuCGGGCCCa--UCUUCUagGCagac -5' |
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9185 | 5' | -54.3 | NC_002512.2 | + | 22212 | 0.67 | 0.972751 |
Target: 5'- uCGAacgGGCCC-GGUGGugcucGGGUCCGUCc- -3' miRNA: 3'- -GCU---UCGGGcCCAUCu----UCUAGGCAGac -5' |
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9185 | 5' | -54.3 | NC_002512.2 | + | 70744 | 0.67 | 0.972751 |
Target: 5'- gCGgcGUCgGGGcGGAAGGUCCgGUCg- -3' miRNA: 3'- -GCuuCGGgCCCaUCUUCUAGG-CAGac -5' |
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9185 | 5' | -54.3 | NC_002512.2 | + | 24922 | 0.67 | 0.974577 |
Target: 5'- cCGAgcGGCCCGGGacGGAGAUCgggacggacgacguCGUCUu -3' miRNA: 3'- -GCU--UCGGGCCCauCUUCUAG--------------GCAGAc -5' |
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9185 | 5' | -54.3 | NC_002512.2 | + | 9622 | 0.66 | 0.97773 |
Target: 5'- gCGucGCCCGGGaccUGGAGGAgCUG-CUGc -3' miRNA: 3'- -GCuuCGGGCCC---AUCUUCUaGGCaGAC- -5' |
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9185 | 5' | -54.3 | NC_002512.2 | + | 103746 | 0.66 | 0.982003 |
Target: 5'- aGAGcGCCCGGGgccccGGGcgCCGUCg- -3' miRNA: 3'- gCUU-CGGGCCCauc--UUCuaGGCAGac -5' |
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9185 | 5' | -54.3 | NC_002512.2 | + | 83331 | 0.66 | 0.982003 |
Target: 5'- gGAGGCCCGGGaccuGGAGA-CCuUCg- -3' miRNA: 3'- gCUUCGGGCCCau--CUUCUaGGcAGac -5' |
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9185 | 5' | -54.3 | NC_002512.2 | + | 42602 | 0.66 | 0.985629 |
Target: 5'- cCGAAG-CCGGGccu--GGUCCGUCUc -3' miRNA: 3'- -GCUUCgGGCCCaucuuCUAGGCAGAc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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