miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9185 5' -54.3 NC_002512.2 + 229939 0.67 0.969981
Target:  5'- aGggGCCCGGGcggAGAGGGagCGg--- -3'
miRNA:   3'- gCuuCGGGCCCa--UCUUCUagGCagac -5'
9185 5' -54.3 NC_002512.2 + 3268 0.67 0.963847
Target:  5'- gGAGGCCCGGGaggccaGGAAGGcCCGg--- -3'
miRNA:   3'- gCUUCGGGCCCa-----UCUUCUaGGCagac -5'
9185 5' -54.3 NC_002512.2 + 10261 0.67 0.962857
Target:  5'- aCGAGGCCgGGGUcGGAGAcgagccgaccgcccUCCucucgucucgucGUCUGg -3'
miRNA:   3'- -GCUUCGGgCCCAuCUUCU--------------AGG------------CAGAC- -5'
9185 5' -54.3 NC_002512.2 + 3766 0.67 0.960473
Target:  5'- cCGcGGGCUCGGGUGGAGGG-CCGa--- -3'
miRNA:   3'- -GC-UUCGGGCCCAUCUUCUaGGCagac -5'
9185 5' -54.3 NC_002512.2 + 7797 0.66 0.982003
Target:  5'- gGAAGUCCGGGaacGGGGUCCGg--- -3'
miRNA:   3'- gCUUCGGGCCCaucUUCUAGGCagac -5'
9185 5' -54.3 NC_002512.2 + 63111 0.66 0.983893
Target:  5'- ---cGUCCGGGacgGGAGGAgagCCGUCc- -3'
miRNA:   3'- gcuuCGGGCCCa--UCUUCUa--GGCAGac -5'
9185 5' -54.3 NC_002512.2 + 42602 0.66 0.985629
Target:  5'- cCGAAG-CCGGGccu--GGUCCGUCUc -3'
miRNA:   3'- -GCUUCgGGCCCaucuuCUAGGCAGAc -5'
9185 5' -54.3 NC_002512.2 + 9622 0.66 0.97773
Target:  5'- gCGucGCCCGGGaccUGGAGGAgCUG-CUGc -3'
miRNA:   3'- -GCuuCGGGCCC---AUCUUCUaGGCaGAC- -5'
9185 5' -54.3 NC_002512.2 + 103746 0.66 0.982003
Target:  5'- aGAGcGCCCGGGgccccGGGcgCCGUCg- -3'
miRNA:   3'- gCUU-CGGGCCCauc--UUCuaGGCAGac -5'
9185 5' -54.3 NC_002512.2 + 83331 0.66 0.982003
Target:  5'- gGAGGCCCGGGaccuGGAGA-CCuUCg- -3'
miRNA:   3'- gCUUCGGGCCCau--CUUCUaGGcAGac -5'
9185 5' -54.3 NC_002512.2 + 28275 0.66 0.985462
Target:  5'- uGggGCCUGcGGUccGAGGAcggcggcggcuucUCCGUCUc -3'
miRNA:   3'- gCuuCGGGC-CCAu-CUUCU-------------AGGCAGAc -5'
9185 5' -54.3 NC_002512.2 + 123665 0.66 0.983893
Target:  5'- gCGgcGgCCGGGcucggGGAAGcgGUCCGUCg- -3'
miRNA:   3'- -GCuuCgGGCCCa----UCUUC--UAGGCAGac -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.