miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9186 5' -55.7 NC_002512.2 + 4114 1.11 0.003653
Target:  5'- cGCAGCCUCGGGAACAGAUGGAUCCCAu -3'
miRNA:   3'- -CGUCGGAGCCCUUGUCUACCUAGGGU- -5'
9186 5' -55.7 NC_002512.2 + 119232 0.68 0.886678
Target:  5'- gGCuGCCcgCGGucGAGCGGcggcUGGAUCCCGg -3'
miRNA:   3'- -CGuCGGa-GCC--CUUGUCu---ACCUAGGGU- -5'
9186 5' -55.7 NC_002512.2 + 141213 0.68 0.893278
Target:  5'- cGCAGCCggggCGGGuuCGGgcGG-UCCCc -3'
miRNA:   3'- -CGUCGGa---GCCCuuGUCuaCCuAGGGu -5'
9186 5' -55.7 NC_002512.2 + 16823 0.66 0.965405
Target:  5'- cGUAGCCcgCGGGGcuggGCAGGgcGAUCUCGa -3'
miRNA:   3'- -CGUCGGa-GCCCU----UGUCUacCUAGGGU- -5'
9186 5' -55.7 NC_002512.2 + 120780 0.72 0.717551
Target:  5'- gGCGGCCgucggCGGGGGCGGcgGGAcggcggcggucUCUCGg -3'
miRNA:   3'- -CGUCGGa----GCCCUUGUCuaCCU-----------AGGGU- -5'
9186 5' -55.7 NC_002512.2 + 122267 0.72 0.717551
Target:  5'- gGCGGCCgCGGGGACGuccUGGAgCCCGu -3'
miRNA:   3'- -CGUCGGaGCCCUUGUcu-ACCUaGGGU- -5'
9186 5' -55.7 NC_002512.2 + 94904 0.72 0.736815
Target:  5'- aGCAGCuCUCGGGGcgaGCAcAUGGAggCCAg -3'
miRNA:   3'- -CGUCG-GAGCCCU---UGUcUACCUagGGU- -5'
9186 5' -55.7 NC_002512.2 + 2496 0.71 0.774231
Target:  5'- gGCGGCCUUgGGGAACGGAUc--UCCCc -3'
miRNA:   3'- -CGUCGGAG-CCCUUGUCUAccuAGGGu -5'
9186 5' -55.7 NC_002512.2 + 152733 0.69 0.850547
Target:  5'- -aAGCUUCGGGGGCGGucGGAaggUCCCc -3'
miRNA:   3'- cgUCGGAGCCCUUGUCuaCCU---AGGGu -5'
9186 5' -55.7 NC_002512.2 + 39706 0.68 0.886678
Target:  5'- uGCAGCCggGGcGAGCGGAUcGGGUCg-- -3'
miRNA:   3'- -CGUCGGagCC-CUUGUCUA-CCUAGggu -5'
9186 5' -55.7 NC_002512.2 + 7740 0.69 0.872837
Target:  5'- aGCGGuCCUCGGGGGCGGAgccGGggCg-- -3'
miRNA:   3'- -CGUC-GGAGCCCUUGUCUa--CCuaGggu -5'
9186 5' -55.7 NC_002512.2 + 102113 0.7 0.842731
Target:  5'- uGCGGCCUCGGccguCGGAgggGGA-CCCu -3'
miRNA:   3'- -CGUCGGAGCCcuu-GUCUa--CCUaGGGu -5'
9186 5' -55.7 NC_002512.2 + 42928 0.75 0.529638
Target:  5'- aCGGCC-CGGGAGCGGG-GGAUCuCCGc -3'
miRNA:   3'- cGUCGGaGCCCUUGUCUaCCUAG-GGU- -5'
9186 5' -55.7 NC_002512.2 + 130147 0.69 0.872837
Target:  5'- cGCGGCCgCGGGGcccgGCGGcgGGccggCCCGc -3'
miRNA:   3'- -CGUCGGaGCCCU----UGUCuaCCua--GGGU- -5'
9186 5' -55.7 NC_002512.2 + 68927 0.73 0.648372
Target:  5'- cGCGGCCUCGGGG------GGAUCCCc -3'
miRNA:   3'- -CGUCGGAGCCCUugucuaCCUAGGGu -5'
9186 5' -55.7 NC_002512.2 + 90077 0.7 0.842731
Target:  5'- --cGCC--GGGGGCGGGUGGAUCuCCGu -3'
miRNA:   3'- cguCGGagCCCUUGUCUACCUAG-GGU- -5'
9186 5' -55.7 NC_002512.2 + 61571 0.68 0.886678
Target:  5'- uGCAGCgCaaGGuGGACgAGAUGGAcaUCCCGa -3'
miRNA:   3'- -CGUCG-GagCC-CUUG-UCUACCU--AGGGU- -5'
9186 5' -55.7 NC_002512.2 + 86221 0.68 0.893278
Target:  5'- cCGGCUUCGGGGAgGGGgacgaGGAggaCCCGg -3'
miRNA:   3'- cGUCGGAGCCCUUgUCUa----CCUa--GGGU- -5'
9186 5' -55.7 NC_002512.2 + 138030 0.72 0.707811
Target:  5'- gGCGGCCUCGGGGGCAuGAgccgGGA-CUg- -3'
miRNA:   3'- -CGUCGGAGCCCUUGU-CUa---CCUaGGgu -5'
9186 5' -55.7 NC_002512.2 + 135810 0.72 0.717551
Target:  5'- cGCcGCCgucgCGGGGGgAGGaGGGUCCCGc -3'
miRNA:   3'- -CGuCGGa---GCCCUUgUCUaCCUAGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.