miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9186 5' -55.7 NC_002512.2 + 2496 0.71 0.774231
Target:  5'- gGCGGCCUUgGGGAACGGAUc--UCCCc -3'
miRNA:   3'- -CGUCGGAG-CCCUUGUCUAccuAGGGu -5'
9186 5' -55.7 NC_002512.2 + 2806 0.66 0.958664
Target:  5'- gGCGGCCggCGGGAcccggcGCGGGcgcGGG-CCCGg -3'
miRNA:   3'- -CGUCGGa-GCCCU------UGUCUa--CCUaGGGU- -5'
9186 5' -55.7 NC_002512.2 + 2957 0.7 0.80105
Target:  5'- aGCAGCCggGGGAGCGGcaGGcgcUCCCGc -3'
miRNA:   3'- -CGUCGGagCCCUUGUCuaCCu--AGGGU- -5'
9186 5' -55.7 NC_002512.2 + 3598 0.68 0.917467
Target:  5'- -gGGUCUCGGGGACAGGcgcaGAgCCCGc -3'
miRNA:   3'- cgUCGGAGCCCUUGUCUac--CUaGGGU- -5'
9186 5' -55.7 NC_002512.2 + 3811 0.67 0.942603
Target:  5'- cGUGG-CUCGGGAcgGCAGAcGGAUCUUc -3'
miRNA:   3'- -CGUCgGAGCCCU--UGUCUaCCUAGGGu -5'
9186 5' -55.7 NC_002512.2 + 4114 1.11 0.003653
Target:  5'- cGCAGCCUCGGGAACAGAUGGAUCCCAu -3'
miRNA:   3'- -CGUCGGAGCCCUUGUCUACCUAGGGU- -5'
9186 5' -55.7 NC_002512.2 + 5321 0.67 0.942603
Target:  5'- gGUAGCCgcggUGGGGAUcGAUGGGgaaggccauggUCCCc -3'
miRNA:   3'- -CGUCGGa---GCCCUUGuCUACCU-----------AGGGu -5'
9186 5' -55.7 NC_002512.2 + 7740 0.69 0.872837
Target:  5'- aGCGGuCCUCGGGGGCGGAgccGGggCg-- -3'
miRNA:   3'- -CGUC-GGAGCCCUUGUCUa--CCuaGggu -5'
9186 5' -55.7 NC_002512.2 + 8289 0.75 0.562767
Target:  5'- gGC-GCCUCGGGAccgggaccucucggaGCGGGUGGGgcgaguucugcUCCCAg -3'
miRNA:   3'- -CGuCGGAGCCCU---------------UGUCUACCU-----------AGGGU- -5'
9186 5' -55.7 NC_002512.2 + 8357 0.66 0.958664
Target:  5'- aGCGGUaggCGGGAGCGccGA-GGAUCCgCGg -3'
miRNA:   3'- -CGUCGga-GCCCUUGU--CUaCCUAGG-GU- -5'
9186 5' -55.7 NC_002512.2 + 8430 0.66 0.965405
Target:  5'- uCGGCCUCGGGuGCuacGccGaGAUCCCc -3'
miRNA:   3'- cGUCGGAGCCCuUGu--CuaC-CUAGGGu -5'
9186 5' -55.7 NC_002512.2 + 10210 0.66 0.954977
Target:  5'- -uGGUCUccgucgacgcgCGGGGGaGGGUGGAUCCCc -3'
miRNA:   3'- cgUCGGA-----------GCCCUUgUCUACCUAGGGu -5'
9186 5' -55.7 NC_002512.2 + 10514 0.68 0.917467
Target:  5'- gGCAGCC-CaGGGAGCAGAggcgcaGGAcCUCGc -3'
miRNA:   3'- -CGUCGGaG-CCCUUGUCUa-----CCUaGGGU- -5'
9186 5' -55.7 NC_002512.2 + 11491 0.66 0.962139
Target:  5'- cGC-GCC-CGGcGGACGGAggcGGAUaCCCGg -3'
miRNA:   3'- -CGuCGGaGCC-CUUGUCUa--CCUA-GGGU- -5'
9186 5' -55.7 NC_002512.2 + 12147 0.71 0.792246
Target:  5'- gGCAGCUUCGGGGGCuccaucgGGAUgUCCAc -3'
miRNA:   3'- -CGUCGGAGCCCUUGucua---CCUA-GGGU- -5'
9186 5' -55.7 NC_002512.2 + 14951 0.66 0.96008
Target:  5'- cGCGGCCaCGGGAggacgaaccgcggccGCGG-UGGAcgcgcagaaagUCCCGc -3'
miRNA:   3'- -CGUCGGaGCCCU---------------UGUCuACCU-----------AGGGU- -5'
9186 5' -55.7 NC_002512.2 + 16823 0.66 0.965405
Target:  5'- cGUAGCCcgCGGGGcuggGCAGGgcGAUCUCGa -3'
miRNA:   3'- -CGUCGGa-GCCCU----UGUCUacCUAGGGU- -5'
9186 5' -55.7 NC_002512.2 + 18385 0.68 0.89966
Target:  5'- cGCGGCC-CGGGcgcuGCGGGaggacgUGGAggCCCGg -3'
miRNA:   3'- -CGUCGGaGCCCu---UGUCU------ACCUa-GGGU- -5'
9186 5' -55.7 NC_002512.2 + 19700 0.7 0.80105
Target:  5'- uGUGGCgUCGGGGACuggacccguGGAUGcGUCCCGa -3'
miRNA:   3'- -CGUCGgAGCCCUUG---------UCUACcUAGGGU- -5'
9186 5' -55.7 NC_002512.2 + 23140 0.69 0.872837
Target:  5'- cGUGGCCcgCGGGGuCAGcAUGGuggCCCAg -3'
miRNA:   3'- -CGUCGGa-GCCCUuGUC-UACCua-GGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.