miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9186 5' -55.7 NC_002512.2 + 226494 0.66 0.965405
Target:  5'- cGUGGuCCUCuGGGGACcuGUGGGcCCCGc -3'
miRNA:   3'- -CGUC-GGAG-CCCUUGucUACCUaGGGU- -5'
9186 5' -55.7 NC_002512.2 + 225880 0.67 0.92295
Target:  5'- gGCuccGCCUCGGGAAuacugcuccuuCAGGUGGugguaaCCCu -3'
miRNA:   3'- -CGu--CGGAGCCCUU-----------GUCUACCua----GGGu -5'
9186 5' -55.7 NC_002512.2 + 184341 0.66 0.946949
Target:  5'- cCAGCCUCGGGGuauauGCgacgccccgaucGGAUuGcGGUCCCGu -3'
miRNA:   3'- cGUCGGAGCCCU-----UG------------UCUA-C-CUAGGGU- -5'
9186 5' -55.7 NC_002512.2 + 183979 0.67 0.928205
Target:  5'- cCGGUugUUCGGGGagauaACAGAaggGGGUCCCGg -3'
miRNA:   3'- cGUCG--GAGCCCU-----UGUCUa--CCUAGGGU- -5'
9186 5' -55.7 NC_002512.2 + 178804 0.67 0.942603
Target:  5'- uGCGuGCCUcugaCGGGAAUAcuGGUGGGUacaCCCAc -3'
miRNA:   3'- -CGU-CGGA----GCCCUUGU--CUACCUA---GGGU- -5'
9186 5' -55.7 NC_002512.2 + 177748 0.66 0.954977
Target:  5'- cUAGCCaaaGGGGCGGGUGGAUCUg- -3'
miRNA:   3'- cGUCGGagcCCUUGUCUACCUAGGgu -5'
9186 5' -55.7 NC_002512.2 + 153491 0.66 0.962139
Target:  5'- cCAGUC-CGGGGACGGcguuccGGGUUCCGg -3'
miRNA:   3'- cGUCGGaGCCCUUGUCua----CCUAGGGU- -5'
9186 5' -55.7 NC_002512.2 + 152935 0.66 0.954977
Target:  5'- cCAGagUCGGGAGCGacuGUGGAUCCgCGa -3'
miRNA:   3'- cGUCggAGCCCUUGUc--UACCUAGG-GU- -5'
9186 5' -55.7 NC_002512.2 + 152733 0.69 0.850547
Target:  5'- -aAGCUUCGGGGGCGGucGGAaggUCCCc -3'
miRNA:   3'- cgUCGGAGCCCUUGUCuaCCU---AGGGu -5'
9186 5' -55.7 NC_002512.2 + 141213 0.68 0.893278
Target:  5'- cGCAGCCggggCGGGuuCGGgcGG-UCCCc -3'
miRNA:   3'- -CGUCGGa---GCCCuuGUCuaCCuAGGGu -5'
9186 5' -55.7 NC_002512.2 + 140714 0.68 0.917467
Target:  5'- -aGGCCUCGGGcguCGGcgGGGUcacguccgggCCCAu -3'
miRNA:   3'- cgUCGGAGCCCuu-GUCuaCCUA----------GGGU- -5'
9186 5' -55.7 NC_002512.2 + 138030 0.72 0.707811
Target:  5'- gGCGGCCUCGGGGGCAuGAgccgGGA-CUg- -3'
miRNA:   3'- -CGUCGGAGCCCUUGU-CUa---CCUaGGgu -5'
9186 5' -55.7 NC_002512.2 + 137555 0.69 0.865606
Target:  5'- cGCGGCC--GGGAGgGGcgGcGGUCCCGa -3'
miRNA:   3'- -CGUCGGagCCCUUgUCuaC-CUAGGGU- -5'
9186 5' -55.7 NC_002512.2 + 137076 0.66 0.965088
Target:  5'- cGC-GCC-CGGGAACAGGcccgcggUGuGcgCCCAg -3'
miRNA:   3'- -CGuCGGaGCCCUUGUCU-------AC-CuaGGGU- -5'
9186 5' -55.7 NC_002512.2 + 135810 0.72 0.717551
Target:  5'- cGCcGCCgucgCGGGGGgAGGaGGGUCCCGc -3'
miRNA:   3'- -CGuCGGa---GCCCUUgUCUaCCUAGGGU- -5'
9186 5' -55.7 NC_002512.2 + 135475 0.68 0.917467
Target:  5'- gGCGGCC-CGGGGcCGGggGGcccCCCGg -3'
miRNA:   3'- -CGUCGGaGCCCUuGUCuaCCua-GGGU- -5'
9186 5' -55.7 NC_002512.2 + 134157 0.66 0.958664
Target:  5'- cCGGCCggCGGGGACGG--GGAgccgucuuccccUCCCGg -3'
miRNA:   3'- cGUCGGa-GCCCUUGUCuaCCU------------AGGGU- -5'
9186 5' -55.7 NC_002512.2 + 130743 0.67 0.928205
Target:  5'- cGCAGCC-CGGcugcGACGGAUcGGGcCCCGa -3'
miRNA:   3'- -CGUCGGaGCCc---UUGUCUA-CCUaGGGU- -5'
9186 5' -55.7 NC_002512.2 + 130147 0.69 0.872837
Target:  5'- cGCGGCCgCGGGGcccgGCGGcgGGccggCCCGc -3'
miRNA:   3'- -CGUCGGaGCCCU----UGUCuaCCua--GGGU- -5'
9186 5' -55.7 NC_002512.2 + 122267 0.72 0.717551
Target:  5'- gGCGGCCgCGGGGACGuccUGGAgCCCGu -3'
miRNA:   3'- -CGUCGGaGCCCUUGUcu-ACCUaGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.