miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9186 5' -55.7 NC_002512.2 + 152733 0.69 0.850547
Target:  5'- -aAGCUUCGGGGGCGGucGGAaggUCCCc -3'
miRNA:   3'- cgUCGGAGCCCUUGUCuaCCU---AGGGu -5'
9186 5' -55.7 NC_002512.2 + 95105 0.69 0.858174
Target:  5'- -gGGCC-CGGGGacGCGGGUGGggCUCGg -3'
miRNA:   3'- cgUCGGaGCCCU--UGUCUACCuaGGGU- -5'
9186 5' -55.7 NC_002512.2 + 118442 0.69 0.858174
Target:  5'- aCGGCCUCGGGGucGCGGAUgacgacGGAgUCuCCGg -3'
miRNA:   3'- cGUCGGAGCCCU--UGUCUA------CCU-AG-GGU- -5'
9186 5' -55.7 NC_002512.2 + 116867 0.69 0.858174
Target:  5'- gGCGGCCggCGGGGcagccGCGGcgGGccUCCCGc -3'
miRNA:   3'- -CGUCGGa-GCCCU-----UGUCuaCCu-AGGGU- -5'
9186 5' -55.7 NC_002512.2 + 137555 0.69 0.865606
Target:  5'- cGCGGCC--GGGAGgGGcgGcGGUCCCGa -3'
miRNA:   3'- -CGUCGGagCCCUUgUCuaC-CUAGGGU- -5'
9186 5' -55.7 NC_002512.2 + 130147 0.69 0.872837
Target:  5'- cGCGGCCgCGGGGcccgGCGGcgGGccggCCCGc -3'
miRNA:   3'- -CGUCGGaGCCCU----UGUCuaCCua--GGGU- -5'
9186 5' -55.7 NC_002512.2 + 23140 0.69 0.872837
Target:  5'- cGUGGCCcgCGGGGuCAGcAUGGuggCCCAg -3'
miRNA:   3'- -CGUCGGa-GCCCUuGUC-UACCua-GGGU- -5'
9186 5' -55.7 NC_002512.2 + 7740 0.69 0.872837
Target:  5'- aGCGGuCCUCGGGGGCGGAgccGGggCg-- -3'
miRNA:   3'- -CGUC-GGAGCCCUUGUCUa--CCuaGggu -5'
9186 5' -55.7 NC_002512.2 + 24919 0.69 0.875672
Target:  5'- aGCGGCC-CGGG-ACGGAgaucgGGAcggacgacgucgucuUCCCGc -3'
miRNA:   3'- -CGUCGGaGCCCuUGUCUa----CCU---------------AGGGU- -5'
9186 5' -55.7 NC_002512.2 + 110572 0.69 0.879863
Target:  5'- gGCGGaCCgCGGGAGCccGgcGGGUCCCc -3'
miRNA:   3'- -CGUC-GGaGCCCUUGu-CuaCCUAGGGu -5'
9186 5' -55.7 NC_002512.2 + 61571 0.68 0.886678
Target:  5'- uGCAGCgCaaGGuGGACgAGAUGGAcaUCCCGa -3'
miRNA:   3'- -CGUCG-GagCC-CUUG-UCUACCU--AGGGU- -5'
9186 5' -55.7 NC_002512.2 + 119232 0.68 0.886678
Target:  5'- gGCuGCCcgCGGucGAGCGGcggcUGGAUCCCGg -3'
miRNA:   3'- -CGuCGGa-GCC--CUUGUCu---ACCUAGGGU- -5'
9186 5' -55.7 NC_002512.2 + 39706 0.68 0.886678
Target:  5'- uGCAGCCggGGcGAGCGGAUcGGGUCg-- -3'
miRNA:   3'- -CGUCGGagCC-CUUGUCUA-CCUAGggu -5'
9186 5' -55.7 NC_002512.2 + 39773 0.68 0.893278
Target:  5'- cGCAGCUgcCGuGGAAgcgcCGGAUGaGGUCCCGc -3'
miRNA:   3'- -CGUCGGa-GC-CCUU----GUCUAC-CUAGGGU- -5'
9186 5' -55.7 NC_002512.2 + 73630 0.68 0.893278
Target:  5'- gGCGGCCUgGGcGGCGGGgcgcggGGGUCCg- -3'
miRNA:   3'- -CGUCGGAgCCcUUGUCUa-----CCUAGGgu -5'
9186 5' -55.7 NC_002512.2 + 141213 0.68 0.893278
Target:  5'- cGCAGCCggggCGGGuuCGGgcGG-UCCCc -3'
miRNA:   3'- -CGUCGGa---GCCCuuGUCuaCCuAGGGu -5'
9186 5' -55.7 NC_002512.2 + 86221 0.68 0.893278
Target:  5'- cCGGCUUCGGGGAgGGGgacgaGGAggaCCCGg -3'
miRNA:   3'- cGUCGGAGCCCUUgUCUa----CCUa--GGGU- -5'
9186 5' -55.7 NC_002512.2 + 18385 0.68 0.89966
Target:  5'- cGCGGCC-CGGGcgcuGCGGGaggacgUGGAggCCCGg -3'
miRNA:   3'- -CGUCGGaGCCCu---UGUCU------ACCUa-GGGU- -5'
9186 5' -55.7 NC_002512.2 + 74156 0.68 0.90582
Target:  5'- cGUAGCCgaggguccgcUCGGGAucCAGGUGGAggCgCCGg -3'
miRNA:   3'- -CGUCGG----------AGCCCUu-GUCUACCUa-G-GGU- -5'
9186 5' -55.7 NC_002512.2 + 24538 0.68 0.911757
Target:  5'- uCAGCgagCGGGGACGGAggGGAgagagaUCCCGc -3'
miRNA:   3'- cGUCGga-GCCCUUGUCUa-CCU------AGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.