miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9186 5' -55.7 NC_002512.2 + 152935 0.66 0.954977
Target:  5'- cCAGagUCGGGAGCGacuGUGGAUCCgCGa -3'
miRNA:   3'- cGUCggAGCCCUUGUc--UACCUAGG-GU- -5'
9186 5' -55.7 NC_002512.2 + 70745 0.66 0.951073
Target:  5'- cGCGGCgUCGGG-GCGGAaGGuccgGUCgCCAa -3'
miRNA:   3'- -CGUCGgAGCCCuUGUCUaCC----UAG-GGU- -5'
9186 5' -55.7 NC_002512.2 + 80659 0.66 0.951073
Target:  5'- aCAGCCacgccaccaUCGGGGGCGGGUGGucaaaaggCCgCGg -3'
miRNA:   3'- cGUCGG---------AGCCCUUGUCUACCua------GG-GU- -5'
9186 5' -55.7 NC_002512.2 + 77271 0.66 0.946949
Target:  5'- uGCAGCCggugugCGGGAGCGGuccccggucgGUGaacgggagcGGUCCCc -3'
miRNA:   3'- -CGUCGGa-----GCCCUUGUC----------UAC---------CUAGGGu -5'
9186 5' -55.7 NC_002512.2 + 95736 0.66 0.946949
Target:  5'- -uGGCCUCGaGGcuccuACGGAUGGG-CCUg -3'
miRNA:   3'- cgUCGGAGC-CCu----UGUCUACCUaGGGu -5'
9186 5' -55.7 NC_002512.2 + 184341 0.66 0.946949
Target:  5'- cCAGCCUCGGGGuauauGCgacgccccgaucGGAUuGcGGUCCCGu -3'
miRNA:   3'- cGUCGGAGCCCU-----UG------------UCUA-C-CUAGGGU- -5'
9186 5' -55.7 NC_002512.2 + 3811 0.67 0.942603
Target:  5'- cGUGG-CUCGGGAcgGCAGAcGGAUCUUc -3'
miRNA:   3'- -CGUCgGAGCCCU--UGUCUaCCUAGGGu -5'
9186 5' -55.7 NC_002512.2 + 178804 0.67 0.942603
Target:  5'- uGCGuGCCUcugaCGGGAAUAcuGGUGGGUacaCCCAc -3'
miRNA:   3'- -CGU-CGGA----GCCCUUGU--CUACCUA---GGGU- -5'
9186 5' -55.7 NC_002512.2 + 5321 0.67 0.942603
Target:  5'- gGUAGCCgcggUGGGGAUcGAUGGGgaaggccauggUCCCc -3'
miRNA:   3'- -CGUCGGa---GCCCUUGuCUACCU-----------AGGGu -5'
9186 5' -55.7 NC_002512.2 + 77099 0.67 0.937561
Target:  5'- gGCAGCgCUuuccgacCGGGAACcGcgGGGUCCg- -3'
miRNA:   3'- -CGUCG-GA-------GCCCUUGuCuaCCUAGGgu -5'
9186 5' -55.7 NC_002512.2 + 121711 0.67 0.933232
Target:  5'- cGCcGCC-CGGGGcCGGGggccgggGGGUCCCu -3'
miRNA:   3'- -CGuCGGaGCCCUuGUCUa------CCUAGGGu -5'
9186 5' -55.7 NC_002512.2 + 102520 0.67 0.933232
Target:  5'- cGCGGCCgUCGGGGGuCAGGcccccGGuuUCCCu -3'
miRNA:   3'- -CGUCGG-AGCCCUU-GUCUa----CCu-AGGGu -5'
9186 5' -55.7 NC_002512.2 + 76662 0.67 0.932739
Target:  5'- -gAGCC-CGGGAcgggggaaccgggGCGGGacGGGUCCCGg -3'
miRNA:   3'- cgUCGGaGCCCU-------------UGUCUa-CCUAGGGU- -5'
9186 5' -55.7 NC_002512.2 + 183979 0.67 0.928205
Target:  5'- cCGGUugUUCGGGGagauaACAGAaggGGGUCCCGg -3'
miRNA:   3'- cGUCG--GAGCCCU-----UGUCUa--CCUAGGGU- -5'
9186 5' -55.7 NC_002512.2 + 130743 0.67 0.928205
Target:  5'- cGCAGCC-CGGcugcGACGGAUcGGGcCCCGa -3'
miRNA:   3'- -CGUCGGaGCCc---UUGUCUA-CCUaGGGU- -5'
9186 5' -55.7 NC_002512.2 + 47602 0.67 0.928205
Target:  5'- aCGGCCa-GGGAGCGGAcGGAcgugcaguUCCCc -3'
miRNA:   3'- cGUCGGagCCCUUGUCUaCCU--------AGGGu -5'
9186 5' -55.7 NC_002512.2 + 79684 0.67 0.928205
Target:  5'- gGCGGCCUcCGGGuuccc--GGAUCCCu -3'
miRNA:   3'- -CGUCGGA-GCCCuugucuaCCUAGGGu -5'
9186 5' -55.7 NC_002512.2 + 69384 0.67 0.92295
Target:  5'- cCGGCCcCGGGcACGGA--GGUCCCGg -3'
miRNA:   3'- cGUCGGaGCCCuUGUCUacCUAGGGU- -5'
9186 5' -55.7 NC_002512.2 + 109244 0.67 0.92295
Target:  5'- uGguGUCcCGGGAAgAGGUGGAcguuUCUCGg -3'
miRNA:   3'- -CguCGGaGCCCUUgUCUACCU----AGGGU- -5'
9186 5' -55.7 NC_002512.2 + 225880 0.67 0.92295
Target:  5'- gGCuccGCCUCGGGAAuacugcuccuuCAGGUGGugguaaCCCu -3'
miRNA:   3'- -CGu--CGGAGCCCUU-----------GUCUACCua----GGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.