Results 21 - 40 of 536 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9189 | 3' | -63.1 | NC_002512.2 | + | 6091 | 1.09 | 0.001391 |
Target: 5'- cGGUCGCCGCCGACGUCCCCGGCGACGu -3' miRNA: 3'- -CCAGCGGCGGCUGCAGGGGCCGCUGC- -5' |
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9189 | 3' | -63.1 | NC_002512.2 | + | 54621 | 0.74 | 0.341807 |
Target: 5'- cGGcCGCCagcuacccGCCGAgCGcggCCCUGGCGACGa -3' miRNA: 3'- -CCaGCGG--------CGGCU-GCa--GGGGCCGCUGC- -5' |
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9189 | 3' | -63.1 | NC_002512.2 | + | 140877 | 0.74 | 0.341807 |
Target: 5'- cGGaucgCGCUGcCCGACGUCCCCgcgcuccgGGuCGACGa -3' miRNA: 3'- -CCa---GCGGC-GGCUGCAGGGG--------CC-GCUGC- -5' |
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9189 | 3' | -63.1 | NC_002512.2 | + | 9685 | 0.75 | 0.301954 |
Target: 5'- ---gGCCGCCGuCGggCCCCGGCGGgGg -3' miRNA: 3'- ccagCGGCGGCuGCa-GGGGCCGCUgC- -5' |
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9189 | 3' | -63.1 | NC_002512.2 | + | 10316 | 0.76 | 0.243666 |
Target: 5'- cGUaggaGCCGUCGcacACGUCCCCGGCGAa- -3' miRNA: 3'- cCAg---CGGCGGC---UGCAGGGGCCGCUgc -5' |
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9189 | 3' | -63.1 | NC_002512.2 | + | 29090 | 0.73 | 0.35591 |
Target: 5'- cGUC-CCGCCu-CGUCUUCGGCGGCGg -3' miRNA: 3'- cCAGcGGCGGcuGCAGGGGCCGCUGC- -5' |
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9189 | 3' | -63.1 | NC_002512.2 | + | 118694 | 0.74 | 0.351636 |
Target: 5'- cGUCGgCGCCGugGgcuUCCCCcgccugccgcucgccGGCGACGu -3' miRNA: 3'- cCAGCgGCGGCugC---AGGGG---------------CCGCUGC- -5' |
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9189 | 3' | -63.1 | NC_002512.2 | + | 40004 | 0.77 | 0.232681 |
Target: 5'- -cUCGCCGCCGcCGUCUCCGccgucuccgacgcGCGACGa -3' miRNA: 3'- ccAGCGGCGGCuGCAGGGGC-------------CGCUGC- -5' |
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9189 | 3' | -63.1 | NC_002512.2 | + | 133661 | 0.74 | 0.321419 |
Target: 5'- cGGUCGCCGCCGcCG-CCgCGGCcGCc -3' miRNA: 3'- -CCAGCGGCGGCuGCaGGgGCCGcUGc -5' |
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9189 | 3' | -63.1 | NC_002512.2 | + | 16526 | 0.74 | 0.321419 |
Target: 5'- uGUCGCCGCCagcgcgGGCGUCCCCcuGGCucCGg -3' miRNA: 3'- cCAGCGGCGG------CUGCAGGGG--CCGcuGC- -5' |
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9189 | 3' | -63.1 | NC_002512.2 | + | 73559 | 0.77 | 0.218199 |
Target: 5'- aGGUCccgcaGCCGCuCGACGagcUCCCCGuGCGACa -3' miRNA: 3'- -CCAG-----CGGCG-GCUGC---AGGGGC-CGCUGc -5' |
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9189 | 3' | -63.1 | NC_002512.2 | + | 12104 | 0.77 | 0.204037 |
Target: 5'- --cCGCCaGCCGgccGCGaCCCCGGCGACGg -3' miRNA: 3'- ccaGCGG-CGGC---UGCaGGGGCCGCUGC- -5' |
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9189 | 3' | -63.1 | NC_002512.2 | + | 131716 | 0.73 | 0.363113 |
Target: 5'- cGGUCGCCGCgccCGUCCagacgCGGCGACc -3' miRNA: 3'- -CCAGCGGCGgcuGCAGGg----GCCGCUGc -5' |
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9189 | 3' | -63.1 | NC_002512.2 | + | 41247 | 0.73 | 0.35591 |
Target: 5'- cGcCGCCGCCGGCG-CCCUuGCGGCc -3' miRNA: 3'- cCaGCGGCGGCUGCaGGGGcCGCUGc -5' |
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9189 | 3' | -63.1 | NC_002512.2 | + | 72070 | 0.74 | 0.334909 |
Target: 5'- aGGUCGCgGCCGGC--CCCCGcaGCGACc -3' miRNA: 3'- -CCAGCGgCGGCUGcaGGGGC--CGCUGc -5' |
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9189 | 3' | -63.1 | NC_002512.2 | + | 103232 | 0.75 | 0.277432 |
Target: 5'- cGUCGCCGCCcgucGACGgCCgCGGCGAgGg -3' miRNA: 3'- cCAGCGGCGG----CUGCaGGgGCCGCUgC- -5' |
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9189 | 3' | -63.1 | NC_002512.2 | + | 17315 | 0.76 | 0.260103 |
Target: 5'- cGUCGCCGCCGucgucguCGUCCCCGuCGuCGu -3' miRNA: 3'- cCAGCGGCGGCu------GCAGGGGCcGCuGC- -5' |
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9189 | 3' | -63.1 | NC_002512.2 | + | 10462 | 0.78 | 0.195043 |
Target: 5'- aGGagGCCGCCGcCGcCCCgGGCGugGg -3' miRNA: 3'- -CCagCGGCGGCuGCaGGGgCCGCugC- -5' |
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9189 | 3' | -63.1 | NC_002512.2 | + | 123120 | 0.74 | 0.314828 |
Target: 5'- --cCGCCGCCGucggcggcCGUCCCgGGgGACGg -3' miRNA: 3'- ccaGCGGCGGCu-------GCAGGGgCCgCUGC- -5' |
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9189 | 3' | -63.1 | NC_002512.2 | + | 134854 | 0.74 | 0.328113 |
Target: 5'- -cUCcCCGCgCGACGUCUCgGGCGACGc -3' miRNA: 3'- ccAGcGGCG-GCUGCAGGGgCCGCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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