miRNA display CGI


Results 21 - 40 of 536 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9189 3' -63.1 NC_002512.2 + 6091 1.09 0.001391
Target:  5'- cGGUCGCCGCCGACGUCCCCGGCGACGu -3'
miRNA:   3'- -CCAGCGGCGGCUGCAGGGGCCGCUGC- -5'
9189 3' -63.1 NC_002512.2 + 54621 0.74 0.341807
Target:  5'- cGGcCGCCagcuacccGCCGAgCGcggCCCUGGCGACGa -3'
miRNA:   3'- -CCaGCGG--------CGGCU-GCa--GGGGCCGCUGC- -5'
9189 3' -63.1 NC_002512.2 + 140877 0.74 0.341807
Target:  5'- cGGaucgCGCUGcCCGACGUCCCCgcgcuccgGGuCGACGa -3'
miRNA:   3'- -CCa---GCGGC-GGCUGCAGGGG--------CC-GCUGC- -5'
9189 3' -63.1 NC_002512.2 + 9685 0.75 0.301954
Target:  5'- ---gGCCGCCGuCGggCCCCGGCGGgGg -3'
miRNA:   3'- ccagCGGCGGCuGCa-GGGGCCGCUgC- -5'
9189 3' -63.1 NC_002512.2 + 10316 0.76 0.243666
Target:  5'- cGUaggaGCCGUCGcacACGUCCCCGGCGAa- -3'
miRNA:   3'- cCAg---CGGCGGC---UGCAGGGGCCGCUgc -5'
9189 3' -63.1 NC_002512.2 + 29090 0.73 0.35591
Target:  5'- cGUC-CCGCCu-CGUCUUCGGCGGCGg -3'
miRNA:   3'- cCAGcGGCGGcuGCAGGGGCCGCUGC- -5'
9189 3' -63.1 NC_002512.2 + 118694 0.74 0.351636
Target:  5'- cGUCGgCGCCGugGgcuUCCCCcgccugccgcucgccGGCGACGu -3'
miRNA:   3'- cCAGCgGCGGCugC---AGGGG---------------CCGCUGC- -5'
9189 3' -63.1 NC_002512.2 + 40004 0.77 0.232681
Target:  5'- -cUCGCCGCCGcCGUCUCCGccgucuccgacgcGCGACGa -3'
miRNA:   3'- ccAGCGGCGGCuGCAGGGGC-------------CGCUGC- -5'
9189 3' -63.1 NC_002512.2 + 133661 0.74 0.321419
Target:  5'- cGGUCGCCGCCGcCG-CCgCGGCcGCc -3'
miRNA:   3'- -CCAGCGGCGGCuGCaGGgGCCGcUGc -5'
9189 3' -63.1 NC_002512.2 + 16526 0.74 0.321419
Target:  5'- uGUCGCCGCCagcgcgGGCGUCCCCcuGGCucCGg -3'
miRNA:   3'- cCAGCGGCGG------CUGCAGGGG--CCGcuGC- -5'
9189 3' -63.1 NC_002512.2 + 73559 0.77 0.218199
Target:  5'- aGGUCccgcaGCCGCuCGACGagcUCCCCGuGCGACa -3'
miRNA:   3'- -CCAG-----CGGCG-GCUGC---AGGGGC-CGCUGc -5'
9189 3' -63.1 NC_002512.2 + 12104 0.77 0.204037
Target:  5'- --cCGCCaGCCGgccGCGaCCCCGGCGACGg -3'
miRNA:   3'- ccaGCGG-CGGC---UGCaGGGGCCGCUGC- -5'
9189 3' -63.1 NC_002512.2 + 131716 0.73 0.363113
Target:  5'- cGGUCGCCGCgccCGUCCagacgCGGCGACc -3'
miRNA:   3'- -CCAGCGGCGgcuGCAGGg----GCCGCUGc -5'
9189 3' -63.1 NC_002512.2 + 41247 0.73 0.35591
Target:  5'- cGcCGCCGCCGGCG-CCCUuGCGGCc -3'
miRNA:   3'- cCaGCGGCGGCUGCaGGGGcCGCUGc -5'
9189 3' -63.1 NC_002512.2 + 72070 0.74 0.334909
Target:  5'- aGGUCGCgGCCGGC--CCCCGcaGCGACc -3'
miRNA:   3'- -CCAGCGgCGGCUGcaGGGGC--CGCUGc -5'
9189 3' -63.1 NC_002512.2 + 103232 0.75 0.277432
Target:  5'- cGUCGCCGCCcgucGACGgCCgCGGCGAgGg -3'
miRNA:   3'- cCAGCGGCGG----CUGCaGGgGCCGCUgC- -5'
9189 3' -63.1 NC_002512.2 + 17315 0.76 0.260103
Target:  5'- cGUCGCCGCCGucgucguCGUCCCCGuCGuCGu -3'
miRNA:   3'- cCAGCGGCGGCu------GCAGGGGCcGCuGC- -5'
9189 3' -63.1 NC_002512.2 + 10462 0.78 0.195043
Target:  5'- aGGagGCCGCCGcCGcCCCgGGCGugGg -3'
miRNA:   3'- -CCagCGGCGGCuGCaGGGgCCGCugC- -5'
9189 3' -63.1 NC_002512.2 + 123120 0.74 0.314828
Target:  5'- --cCGCCGCCGucggcggcCGUCCCgGGgGACGg -3'
miRNA:   3'- ccaGCGGCGGCu-------GCAGGGgCCgCUGC- -5'
9189 3' -63.1 NC_002512.2 + 134854 0.74 0.328113
Target:  5'- -cUCcCCGCgCGACGUCUCgGGCGACGc -3'
miRNA:   3'- ccAGcGGCG-GCUGCAGGGgCCGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.