miRNA display CGI


Results 1 - 20 of 536 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9189 3' -63.1 NC_002512.2 + 103232 0.75 0.277432
Target:  5'- cGUCGCCGCCcgucGACGgCCgCGGCGAgGg -3'
miRNA:   3'- cCAGCGGCGG----CUGCaGGgGCCGCUgC- -5'
9189 3' -63.1 NC_002512.2 + 6091 1.09 0.001391
Target:  5'- cGGUCGCCGCCGACGUCCCCGGCGACGu -3'
miRNA:   3'- -CCAGCGGCGGCUGCAGGGGCCGCUGC- -5'
9189 3' -63.1 NC_002512.2 + 104270 0.93 0.017666
Target:  5'- uGGUCGCCGCCGGCGUCUuucucgcguCCGGCGGCGg -3'
miRNA:   3'- -CCAGCGGCGGCUGCAGG---------GGCCGCUGC- -5'
9189 3' -63.1 NC_002512.2 + 16247 0.77 0.233194
Target:  5'- cGUCGUCGCCGuCG-CCCgCGGCGGCc -3'
miRNA:   3'- cCAGCGGCGGCuGCaGGG-GCCGCUGc -5'
9189 3' -63.1 NC_002512.2 + 33476 0.76 0.238382
Target:  5'- cGGcCGCCGCCccccGCGUCCCCGcgccagacccGCGGCGu -3'
miRNA:   3'- -CCaGCGGCGGc---UGCAGGGGC----------CGCUGC- -5'
9189 3' -63.1 NC_002512.2 + 97873 0.84 0.075998
Target:  5'- cGUCGCCGCCGAgGUCCCCccggcgcccggGGCGGCc -3'
miRNA:   3'- cCAGCGGCGGCUgCAGGGG-----------CCGCUGc -5'
9189 3' -63.1 NC_002512.2 + 73559 0.77 0.218199
Target:  5'- aGGUCccgcaGCCGCuCGACGagcUCCCCGuGCGACa -3'
miRNA:   3'- -CCAG-----CGGCG-GCUGC---AGGGGC-CGCUGc -5'
9189 3' -63.1 NC_002512.2 + 40004 0.77 0.232681
Target:  5'- -cUCGCCGCCGcCGUCUCCGccgucuccgacgcGCGACGa -3'
miRNA:   3'- ccAGCGGCGGCuGCAGGGGC-------------CGCUGC- -5'
9189 3' -63.1 NC_002512.2 + 3962 0.76 0.265779
Target:  5'- cGUCGUCGUCGuCGUCCCCucGGuCGACGc -3'
miRNA:   3'- cCAGCGGCGGCuGCAGGGG--CC-GCUGC- -5'
9189 3' -63.1 NC_002512.2 + 128185 0.75 0.29567
Target:  5'- aGGUCgccgagcggGCCGCCGGCGggaCCGGgGACGg -3'
miRNA:   3'- -CCAG---------CGGCGGCUGCaggGGCCgCUGC- -5'
9189 3' -63.1 NC_002512.2 + 139251 0.66 0.780322
Target:  5'- cGGcCGCggCGCCGggucGCGcCgCCCGGCGcGCGg -3'
miRNA:   3'- -CCaGCG--GCGGC----UGCaG-GGGCCGC-UGC- -5'
9189 3' -63.1 NC_002512.2 + 10462 0.78 0.195043
Target:  5'- aGGagGCCGCCGcCGcCCCgGGCGugGg -3'
miRNA:   3'- -CCagCGGCGGCuGCaGGGgCCGCugC- -5'
9189 3' -63.1 NC_002512.2 + 5828 0.79 0.158753
Target:  5'- aGGUCGCagaCGcCCGAcgaguCGUCCCCGGCGGCc -3'
miRNA:   3'- -CCAGCG---GC-GGCU-----GCAGGGGCCGCUGc -5'
9189 3' -63.1 NC_002512.2 + 10316 0.76 0.243666
Target:  5'- cGUaggaGCCGUCGcacACGUCCCCGGCGAa- -3'
miRNA:   3'- cCAg---CGGCGGC---UGCAGGGGCCGCUgc -5'
9189 3' -63.1 NC_002512.2 + 17315 0.76 0.260103
Target:  5'- cGUCGCCGCCGucgucguCGUCCCCGuCGuCGu -3'
miRNA:   3'- cCAGCGGCGGCu------GCAGGGGCcGCuGC- -5'
9189 3' -63.1 NC_002512.2 + 12104 0.77 0.204037
Target:  5'- --cCGCCaGCCGgccGCGaCCCCGGCGACGg -3'
miRNA:   3'- ccaGCGG-CGGC---UGCaGGGGCCGCUGC- -5'
9189 3' -63.1 NC_002512.2 + 55466 0.75 0.289489
Target:  5'- uGGUaGCC-CCGACGgaggCCCCGGCGccGCGg -3'
miRNA:   3'- -CCAgCGGcGGCUGCa---GGGGCCGC--UGC- -5'
9189 3' -63.1 NC_002512.2 + 63249 0.75 0.29567
Target:  5'- cGGUgGCCcccugauaGCCGACGUUCCCGGaCG-CGg -3'
miRNA:   3'- -CCAgCGG--------CGGCUGCAGGGGCC-GCuGC- -5'
9189 3' -63.1 NC_002512.2 + 130144 0.77 0.223104
Target:  5'- uGUCGCgGCCG-CGgggCCCGGCGGCGg -3'
miRNA:   3'- cCAGCGgCGGCuGCag-GGGCCGCUGC- -5'
9189 3' -63.1 NC_002512.2 + 79179 0.76 0.238382
Target:  5'- cGGUCgGCCGCCGAgagccaacgGUCCgUCGGCGGCGa -3'
miRNA:   3'- -CCAG-CGGCGGCUg--------CAGG-GGCCGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.