miRNA display CGI


Results 1 - 20 of 536 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9189 3' -63.1 NC_002512.2 + 77342 0.66 0.763303
Target:  5'- cGGaaagCGCUGCCGGugaacgucgGUCCCCGGuCGAa- -3'
miRNA:   3'- -CCa---GCGGCGGCUg--------CAGGGGCC-GCUgc -5'
9189 3' -63.1 NC_002512.2 + 131782 0.66 0.771864
Target:  5'- ---gGCCGuuGGCGUCCUucaCGGCGuCu -3'
miRNA:   3'- ccagCGGCggCUGCAGGG---GCCGCuGc -5'
9189 3' -63.1 NC_002512.2 + 8010 0.66 0.771864
Target:  5'- --cCGCgGCCGACuaccgCCCCGGCucCGc -3'
miRNA:   3'- ccaGCGgCGGCUGca---GGGGCCGcuGC- -5'
9189 3' -63.1 NC_002512.2 + 128705 0.66 0.771864
Target:  5'- ---gGCgGCCGGCGg-CgCGGCGACGc -3'
miRNA:   3'- ccagCGgCGGCUGCagGgGCCGCUGC- -5'
9189 3' -63.1 NC_002512.2 + 28812 0.66 0.771012
Target:  5'- cGUCuGCCG-CGACGUCagcguggccgacaUCgGGCGGCGg -3'
miRNA:   3'- cCAG-CGGCgGCUGCAG-------------GGgCCGCUGC- -5'
9189 3' -63.1 NC_002512.2 + 79923 0.66 0.766739
Target:  5'- cGGagGCCGCCggGgaggcgaucgagaucGCGUUCUCGGaCGACGa -3'
miRNA:   3'- -CCagCGGCGG--C---------------UGCAGGGGCC-GCUGC- -5'
9189 3' -63.1 NC_002512.2 + 22968 0.66 0.763303
Target:  5'- cGGUaGCUGuuGAUGUgCCgCCggGGCGACGc -3'
miRNA:   3'- -CCAgCGGCggCUGCA-GG-GG--CCGCUGC- -5'
9189 3' -63.1 NC_002512.2 + 123903 0.66 0.763303
Target:  5'- cGGcCGCCG-CGGCGUuauauaCCCgGGUGAgGg -3'
miRNA:   3'- -CCaGCGGCgGCUGCA------GGGgCCGCUgC- -5'
9189 3' -63.1 NC_002512.2 + 9634 0.66 0.763303
Target:  5'- aGGcCGUgGCCuGCGUCgCCCGG-GACc -3'
miRNA:   3'- -CCaGCGgCGGcUGCAG-GGGCCgCUGc -5'
9189 3' -63.1 NC_002512.2 + 110498 0.66 0.771864
Target:  5'- cGG-CGCUuuauaaGCCGAUGcuccUCCCC-GCGGCGg -3'
miRNA:   3'- -CCaGCGG------CGGCUGC----AGGGGcCGCUGC- -5'
9189 3' -63.1 NC_002512.2 + 56510 0.66 0.771864
Target:  5'- --cCGCCGCggCGGCGaaCCCCgggucgggGGCGGCGg -3'
miRNA:   3'- ccaGCGGCG--GCUGCa-GGGG--------CCGCUGC- -5'
9189 3' -63.1 NC_002512.2 + 31971 0.66 0.771864
Target:  5'- cGG-CGCCgGCCGGCGgaccUCCacguCGGCGAa- -3'
miRNA:   3'- -CCaGCGG-CGGCUGC----AGGg---GCCGCUgc -5'
9189 3' -63.1 NC_002512.2 + 38925 0.66 0.780322
Target:  5'- cGGUCuuccCCGggGGCGUCCCCGGCcuccuCGg -3'
miRNA:   3'- -CCAGc---GGCggCUGCAGGGGCCGcu---GC- -5'
9189 3' -63.1 NC_002512.2 + 44144 0.66 0.780322
Target:  5'- uGUCGCCGUgGugGgUCgUCCGGCaccugGACGc -3'
miRNA:   3'- cCAGCGGCGgCugC-AG-GGGCCG-----CUGC- -5'
9189 3' -63.1 NC_002512.2 + 71341 0.66 0.780322
Target:  5'- cGGggCGUCGUCGAC-UUCUCGGCcGCGa -3'
miRNA:   3'- -CCa-GCGGCGGCUGcAGGGGCCGcUGC- -5'
9189 3' -63.1 NC_002512.2 + 226995 0.66 0.780322
Target:  5'- --aCGCCuCCGcCGUCUCCGG-GACa -3'
miRNA:   3'- ccaGCGGcGGCuGCAGGGGCCgCUGc -5'
9189 3' -63.1 NC_002512.2 + 9098 0.66 0.780322
Target:  5'- gGGU-GCCGcCCGGCagcgagcccGUCUggcccaagcuCCGGCGGCGg -3'
miRNA:   3'- -CCAgCGGC-GGCUG---------CAGG----------GGCCGCUGC- -5'
9189 3' -63.1 NC_002512.2 + 28414 0.66 0.779481
Target:  5'- cGUCGUCGCggggggagaCGACGgcuggggcgccgaUCCCgGGgGACGg -3'
miRNA:   3'- cCAGCGGCG---------GCUGC-------------AGGGgCCgCUGC- -5'
9189 3' -63.1 NC_002512.2 + 126830 0.66 0.771864
Target:  5'- cGUCGUaggacaggacgGCCGAgG-CCCgGGCGGCGu -3'
miRNA:   3'- cCAGCGg----------CGGCUgCaGGGgCCGCUGC- -5'
9189 3' -63.1 NC_002512.2 + 23595 0.66 0.771864
Target:  5'- -cUCGCCGCacuCGUacaCCgCCGGCGGCc -3'
miRNA:   3'- ccAGCGGCGgcuGCA---GG-GGCCGCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.