miRNA display CGI


Results 1 - 20 of 536 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9189 3' -63.1 NC_002512.2 + 6091 1.09 0.001391
Target:  5'- cGGUCGCCGCCGACGUCCCCGGCGACGu -3'
miRNA:   3'- -CCAGCGGCGGCUGCAGGGGCCGCUGC- -5'
9189 3' -63.1 NC_002512.2 + 104270 0.93 0.017666
Target:  5'- uGGUCGCCGCCGGCGUCUuucucgcguCCGGCGGCGg -3'
miRNA:   3'- -CCAGCGGCGGCUGCAGG---------GGCCGCUGC- -5'
9189 3' -63.1 NC_002512.2 + 97873 0.84 0.075998
Target:  5'- cGUCGCCGCCGAgGUCCCCccggcgcccggGGCGGCc -3'
miRNA:   3'- cCAGCGGCGGCUgCAGGGG-----------CCGCUGc -5'
9189 3' -63.1 NC_002512.2 + 146080 0.82 0.109014
Target:  5'- cGcCGCCGCCGGCGcgcccgacgcggUCCUCGGCGGCGg -3'
miRNA:   3'- cCaGCGGCGGCUGC------------AGGGGCCGCUGC- -5'
9189 3' -63.1 NC_002512.2 + 99902 0.8 0.134865
Target:  5'- cGG-CGCCGCCGGCGcUCCCGGCGGu- -3'
miRNA:   3'- -CCaGCGGCGGCUGCaGGGGCCGCUgc -5'
9189 3' -63.1 NC_002512.2 + 132888 0.79 0.15512
Target:  5'- -aUCGaCGaCGGCGUCCCCGGCGACGc -3'
miRNA:   3'- ccAGCgGCgGCUGCAGGGGCCGCUGC- -5'
9189 3' -63.1 NC_002512.2 + 5828 0.79 0.158753
Target:  5'- aGGUCGCagaCGcCCGAcgaguCGUCCCCGGCGGCc -3'
miRNA:   3'- -CCAGCG---GC-GGCU-----GCAGGGGCCGCUGc -5'
9189 3' -63.1 NC_002512.2 + 157082 0.79 0.162463
Target:  5'- gGGUCGCCGgcgcccaCGGCGggcccgUCCCGGCGACGu -3'
miRNA:   3'- -CCAGCGGCg------GCUGCa-----GGGGCCGCUGC- -5'
9189 3' -63.1 NC_002512.2 + 217110 0.79 0.170117
Target:  5'- cGGgggCGCCGCCGA-GUCCUgCGGCGGCa -3'
miRNA:   3'- -CCa--GCGGCGGCUgCAGGG-GCCGCUGc -5'
9189 3' -63.1 NC_002512.2 + 93689 0.79 0.170117
Target:  5'- ---gGCCGCCGGCGUCgacgcgauCCCGGCGACc -3'
miRNA:   3'- ccagCGGCGGCUGCAG--------GGGCCGCUGc -5'
9189 3' -63.1 NC_002512.2 + 130201 0.78 0.195043
Target:  5'- cGUCGCaugaucgGCCaGugGUCCUCGGCGGCGg -3'
miRNA:   3'- cCAGCGg------CGG-CugCAGGGGCCGCUGC- -5'
9189 3' -63.1 NC_002512.2 + 10462 0.78 0.195043
Target:  5'- aGGagGCCGCCGcCGcCCCgGGCGugGg -3'
miRNA:   3'- -CCagCGGCGGCuGCaGGGgCCGCugC- -5'
9189 3' -63.1 NC_002512.2 + 147855 0.77 0.204036
Target:  5'- --cCGCCGCCGGCGcgaccccgaCCCgGGCGACGg -3'
miRNA:   3'- ccaGCGGCGGCUGCa--------GGGgCCGCUGC- -5'
9189 3' -63.1 NC_002512.2 + 12104 0.77 0.204037
Target:  5'- --cCGCCaGCCGgccGCGaCCCCGGCGACGg -3'
miRNA:   3'- ccaGCGG-CGGC---UGCaGGGGCCGCUGC- -5'
9189 3' -63.1 NC_002512.2 + 101696 0.77 0.208667
Target:  5'- cGGUC-CCGCCGGCGgCCCgcuCGGCGACc -3'
miRNA:   3'- -CCAGcGGCGGCUGCaGGG---GCCGCUGc -5'
9189 3' -63.1 NC_002512.2 + 111076 0.77 0.213864
Target:  5'- cGGUCGCCGaccaCGACGggggcccacagcuccCgCCCGGCGGCGg -3'
miRNA:   3'- -CCAGCGGCg---GCUGCa--------------G-GGGCCGCUGC- -5'
9189 3' -63.1 NC_002512.2 + 73559 0.77 0.218199
Target:  5'- aGGUCccgcaGCCGCuCGACGagcUCCCCGuGCGACa -3'
miRNA:   3'- -CCAG-----CGGCG-GCUGC---AGGGGC-CGCUGc -5'
9189 3' -63.1 NC_002512.2 + 114182 0.77 0.218199
Target:  5'- cGGUgG-CGCCGGCGUCgggCCCGGCGGCc -3'
miRNA:   3'- -CCAgCgGCGGCUGCAG---GGGCCGCUGc -5'
9189 3' -63.1 NC_002512.2 + 130144 0.77 0.223104
Target:  5'- uGUCGCgGCCG-CGgggCCCGGCGGCGg -3'
miRNA:   3'- cCAGCGgCGGCuGCag-GGGCCGCUGC- -5'
9189 3' -63.1 NC_002512.2 + 95573 0.77 0.228102
Target:  5'- cGUCGgCGCCGg---CCCCGGCGACGu -3'
miRNA:   3'- cCAGCgGCGGCugcaGGGGCCGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.