miRNA display CGI


Results 1 - 20 of 536 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9189 3' -63.1 NC_002512.2 + 343 0.66 0.745899
Target:  5'- cGG-CGCCccgcCCGGC-UCCCCGGCGu-- -3'
miRNA:   3'- -CCaGCGGc---GGCUGcAGGGGCCGCugc -5'
9189 3' -63.1 NC_002512.2 + 1960 0.72 0.416299
Target:  5'- -cUCGuCCGCCGGCGUCggaGGCGGCGc -3'
miRNA:   3'- ccAGC-GGCGGCUGCAGgggCCGCUGC- -5'
9189 3' -63.1 NC_002512.2 + 2141 0.67 0.719197
Target:  5'- cGGUCGUCGCCuccccCGUCa-CGGCGGuCGa -3'
miRNA:   3'- -CCAGCGGCGGcu---GCAGggGCCGCU-GC- -5'
9189 3' -63.1 NC_002512.2 + 2196 0.74 0.328113
Target:  5'- --cCGCCGCCGucguCGUCUcggucgCCGGCGGCGc -3'
miRNA:   3'- ccaGCGGCGGCu---GCAGG------GGCCGCUGC- -5'
9189 3' -63.1 NC_002512.2 + 2220 0.67 0.710164
Target:  5'- cGGacgCGCCGCCucCGaCgCCGGCgGACGa -3'
miRNA:   3'- -CCa--GCGGCGGcuGCaGgGGCCG-CUGC- -5'
9189 3' -63.1 NC_002512.2 + 2270 0.67 0.673554
Target:  5'- -cUCGCCGCCGcCGcccgCCCUccggccgcugcgGGUGGCGg -3'
miRNA:   3'- ccAGCGGCGGCuGCa---GGGG------------CCGCUGC- -5'
9189 3' -63.1 NC_002512.2 + 2368 0.66 0.771864
Target:  5'- cGUcCGCCGCCGGacucucccCCCCGggucGCGGCGu -3'
miRNA:   3'- cCA-GCGGCGGCUgca-----GGGGC----CGCUGC- -5'
9189 3' -63.1 NC_002512.2 + 2415 0.67 0.682765
Target:  5'- -cUCGCgGCCGGcCGcCCCCGGCcucucccccGGCa -3'
miRNA:   3'- ccAGCGgCGGCU-GCaGGGGCCG---------CUGc -5'
9189 3' -63.1 NC_002512.2 + 2801 0.7 0.508693
Target:  5'- cGGcCgGCgGCCGGCGggaCCCGGCG-CGg -3'
miRNA:   3'- -CCaG-CGgCGGCUGCag-GGGCCGCuGC- -5'
9189 3' -63.1 NC_002512.2 + 3073 0.66 0.763303
Target:  5'- cGG-CGgCGgCGGCGgCCaCGGCGGCGg -3'
miRNA:   3'- -CCaGCgGCgGCUGCaGGgGCCGCUGC- -5'
9189 3' -63.1 NC_002512.2 + 3157 0.71 0.448752
Target:  5'- cGGUC-CCGCCGuCGUCgCCC-GCGGCc -3'
miRNA:   3'- -CCAGcGGCGGCuGCAG-GGGcCGCUGc -5'
9189 3' -63.1 NC_002512.2 + 3185 0.68 0.645781
Target:  5'- --cCGUCGCuCGACGccgCCgCgGGCGACGg -3'
miRNA:   3'- ccaGCGGCG-GCUGCa--GG-GgCCGCUGC- -5'
9189 3' -63.1 NC_002512.2 + 3320 0.68 0.645781
Target:  5'- uGGcCGCCGCCGccgccGCGUCCgCCGccgucaaGGCGg -3'
miRNA:   3'- -CCaGCGGCGGC-----UGCAGG-GGCcg-----CUGC- -5'
9189 3' -63.1 NC_002512.2 + 3368 0.67 0.701076
Target:  5'- cGGagGgCGagGACGUCUCgGGCGACGc -3'
miRNA:   3'- -CCagCgGCggCUGCAGGGgCCGCUGC- -5'
9189 3' -63.1 NC_002512.2 + 3451 0.69 0.608652
Target:  5'- --gCGCCggGCCGuCG-CCCgCGGCGGCGu -3'
miRNA:   3'- ccaGCGG--CGGCuGCaGGG-GCCGCUGC- -5'
9189 3' -63.1 NC_002512.2 + 3666 0.71 0.465494
Target:  5'- -aUCGCU-CCGGC-UCCCCGGUGAUGg -3'
miRNA:   3'- ccAGCGGcGGCUGcAGGGGCCGCUGC- -5'
9189 3' -63.1 NC_002512.2 + 3694 0.67 0.719197
Target:  5'- cGUCGCCGucaCCGACcagCCCCGcGaGGCGg -3'
miRNA:   3'- cCAGCGGC---GGCUGca-GGGGC-CgCUGC- -5'
9189 3' -63.1 NC_002512.2 + 3962 0.76 0.265779
Target:  5'- cGUCGUCGUCGuCGUCCCCucGGuCGACGc -3'
miRNA:   3'- cCAGCGGCGGCuGCAGGGG--CC-GCUGC- -5'
9189 3' -63.1 NC_002512.2 + 4077 0.67 0.673554
Target:  5'- aGGUCccaggccacccgGCCGCCcGCGg-CCCGGcCGGCGc -3'
miRNA:   3'- -CCAG------------CGGCGGcUGCagGGGCC-GCUGC- -5'
9189 3' -63.1 NC_002512.2 + 4167 0.67 0.701076
Target:  5'- aGUCGCCG-CGGC-UCgCgGGCGACa -3'
miRNA:   3'- cCAGCGGCgGCUGcAGgGgCCGCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.