miRNA display CGI


Results 1 - 20 of 536 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9189 3' -63.1 NC_002512.2 + 9470 0.66 0.780322
Target:  5'- uGG-C-CCGCCGcguCGUgCUgGGCGACGg -3'
miRNA:   3'- -CCaGcGGCGGCu--GCAgGGgCCGCUGC- -5'
9189 3' -63.1 NC_002512.2 + 86131 0.66 0.780322
Target:  5'- aGGUCGCggaccuggaaGCCGACG-CCgCGGCcGCc -3'
miRNA:   3'- -CCAGCGg---------CGGCUGCaGGgGCCGcUGc -5'
9189 3' -63.1 NC_002512.2 + 58362 0.66 0.780322
Target:  5'- gGGcUUGaugCGCuCGACGUCCUCgagGGUGACGg -3'
miRNA:   3'- -CC-AGCg--GCG-GCUGCAGGGG---CCGCUGC- -5'
9189 3' -63.1 NC_002512.2 + 38666 0.66 0.780322
Target:  5'- aGGagGCCGggGACGcCCCCGGggaagaccgagcCGACGg -3'
miRNA:   3'- -CCagCGGCggCUGCaGGGGCC------------GCUGC- -5'
9189 3' -63.1 NC_002512.2 + 43576 0.66 0.780322
Target:  5'- aGGaCGuuGCCGAUGaCCaCGGCGucGCGg -3'
miRNA:   3'- -CCaGCggCGGCUGCaGGgGCCGC--UGC- -5'
9189 3' -63.1 NC_002512.2 + 139251 0.66 0.780322
Target:  5'- cGGcCGCggCGCCGggucGCGcCgCCCGGCGcGCGg -3'
miRNA:   3'- -CCaGCG--GCGGC----UGCaG-GGGCCGC-UGC- -5'
9189 3' -63.1 NC_002512.2 + 101599 0.66 0.780322
Target:  5'- cGGUCgugcggGCgGCCGuCGg-CCCGGCGcCGg -3'
miRNA:   3'- -CCAG------CGgCGGCuGCagGGGCCGCuGC- -5'
9189 3' -63.1 NC_002512.2 + 73076 0.66 0.780322
Target:  5'- aGGUUGCCGaccgagugcaCGACGUgCUgguacaCGGCGugGu -3'
miRNA:   3'- -CCAGCGGCg---------GCUGCAgGG------GCCGCugC- -5'
9189 3' -63.1 NC_002512.2 + 38536 0.66 0.780322
Target:  5'- aGGUCGCgCGgCGACcuacCCCCGucGCgGACGg -3'
miRNA:   3'- -CCAGCG-GCgGCUGca--GGGGC--CG-CUGC- -5'
9189 3' -63.1 NC_002512.2 + 9098 0.66 0.780322
Target:  5'- gGGU-GCCGcCCGGCagcgagcccGUCUggcccaagcuCCGGCGGCGg -3'
miRNA:   3'- -CCAgCGGC-GGCUG---------CAGG----------GGCCGCUGC- -5'
9189 3' -63.1 NC_002512.2 + 38925 0.66 0.780322
Target:  5'- cGGUCuuccCCGggGGCGUCCCCGGCcuccuCGg -3'
miRNA:   3'- -CCAGc---GGCggCUGCAGGGGCCGcu---GC- -5'
9189 3' -63.1 NC_002512.2 + 44144 0.66 0.780322
Target:  5'- uGUCGCCGUgGugGgUCgUCCGGCaccugGACGc -3'
miRNA:   3'- cCAGCGGCGgCugC-AG-GGGCCG-----CUGC- -5'
9189 3' -63.1 NC_002512.2 + 71341 0.66 0.780322
Target:  5'- cGGggCGUCGUCGAC-UUCUCGGCcGCGa -3'
miRNA:   3'- -CCa-GCGGCGGCUGcAGGGGCCGcUGC- -5'
9189 3' -63.1 NC_002512.2 + 226995 0.66 0.780322
Target:  5'- --aCGCCuCCGcCGUCUCCGG-GACa -3'
miRNA:   3'- ccaGCGGcGGCuGCAGGGGCCgCUGc -5'
9189 3' -63.1 NC_002512.2 + 28414 0.66 0.779481
Target:  5'- cGUCGUCGCggggggagaCGACGgcuggggcgccgaUCCCgGGgGACGg -3'
miRNA:   3'- cCAGCGGCG---------GCUGC-------------AGGGgCCgCUGC- -5'
9189 3' -63.1 NC_002512.2 + 27417 0.66 0.777796
Target:  5'- -aUCGCCGCCGucgccgaGCGUCCgCGGaaaaaaggagaaGugGg -3'
miRNA:   3'- ccAGCGGCGGC-------UGCAGGgGCCg-----------CugC- -5'
9189 3' -63.1 NC_002512.2 + 91655 0.66 0.777796
Target:  5'- cGUCGUguugaugagcugcgCGCgGACGUCCgUCGGCcccGACGg -3'
miRNA:   3'- cCAGCG--------------GCGgCUGCAGG-GGCCG---CUGC- -5'
9189 3' -63.1 NC_002512.2 + 8010 0.66 0.771864
Target:  5'- --cCGCgGCCGACuaccgCCCCGGCucCGc -3'
miRNA:   3'- ccaGCGgCGGCUGca---GGGGCCGcuGC- -5'
9189 3' -63.1 NC_002512.2 + 131782 0.66 0.771864
Target:  5'- ---gGCCGuuGGCGUCCUucaCGGCGuCu -3'
miRNA:   3'- ccagCGGCggCUGCAGGG---GCCGCuGc -5'
9189 3' -63.1 NC_002512.2 + 110498 0.66 0.771864
Target:  5'- cGG-CGCUuuauaaGCCGAUGcuccUCCCC-GCGGCGg -3'
miRNA:   3'- -CCaGCGG------CGGCUGC----AGGGGcCGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.