Results 21 - 40 of 536 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
9189 | 3' | -63.1 | NC_002512.2 | + | 2368 | 0.66 | 0.771864 |
Target: 5'- cGUcCGCCGCCGGacucucccCCCCGggucGCGGCGu -3' miRNA: 3'- cCA-GCGGCGGCUgca-----GGGGC----CGCUGC- -5' |
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9189 | 3' | -63.1 | NC_002512.2 | + | 14586 | 0.66 | 0.771864 |
Target: 5'- aGUCGCCGCagccCGucUCCCCGuaGAUGg -3' miRNA: 3'- cCAGCGGCGgcu-GC--AGGGGCcgCUGC- -5' |
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9189 | 3' | -63.1 | NC_002512.2 | + | 78787 | 0.66 | 0.771864 |
Target: 5'- --gCGCC-CCGAgacacgugcaCGUCUCCGGCG-CGg -3' miRNA: 3'- ccaGCGGcGGCU----------GCAGGGGCCGCuGC- -5' |
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9189 | 3' | -63.1 | NC_002512.2 | + | 104088 | 0.66 | 0.771864 |
Target: 5'- cGUCcgGUCGCCGugGUUgCCGGUG-Cu -3' miRNA: 3'- cCAG--CGGCGGCugCAGgGGCCGCuGc -5' |
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9189 | 3' | -63.1 | NC_002512.2 | + | 31971 | 0.66 | 0.771864 |
Target: 5'- cGG-CGCCgGCCGGCGgaccUCCacguCGGCGAa- -3' miRNA: 3'- -CCaGCGG-CGGCUGC----AGGg---GCCGCUgc -5' |
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9189 | 3' | -63.1 | NC_002512.2 | + | 40646 | 0.66 | 0.771864 |
Target: 5'- --cCGaCGgUGACGUCCgcgaCGGCGACGg -3' miRNA: 3'- ccaGCgGCgGCUGCAGGg---GCCGCUGC- -5' |
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9189 | 3' | -63.1 | NC_002512.2 | + | 135362 | 0.66 | 0.771864 |
Target: 5'- cGUCGaCCGCUu-CGUCCUgGGCGGg- -3' miRNA: 3'- cCAGC-GGCGGcuGCAGGGgCCGCUgc -5' |
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9189 | 3' | -63.1 | NC_002512.2 | + | 126830 | 0.66 | 0.771864 |
Target: 5'- cGUCGUaggacaggacgGCCGAgG-CCCgGGCGGCGu -3' miRNA: 3'- cCAGCGg----------CGGCUgCaGGGgCCGCUGC- -5' |
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9189 | 3' | -63.1 | NC_002512.2 | + | 23595 | 0.66 | 0.771864 |
Target: 5'- -cUCGCCGCacuCGUacaCCgCCGGCGGCc -3' miRNA: 3'- ccAGCGGCGgcuGCA---GG-GGCCGCUGc -5' |
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9189 | 3' | -63.1 | NC_002512.2 | + | 128705 | 0.66 | 0.771864 |
Target: 5'- ---gGCgGCCGGCGg-CgCGGCGACGc -3' miRNA: 3'- ccagCGgCGGCUGCagGgGCCGCUGC- -5' |
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9189 | 3' | -63.1 | NC_002512.2 | + | 8010 | 0.66 | 0.771864 |
Target: 5'- --cCGCgGCCGACuaccgCCCCGGCucCGc -3' miRNA: 3'- ccaGCGgCGGCUGca---GGGGCCGcuGC- -5' |
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9189 | 3' | -63.1 | NC_002512.2 | + | 131782 | 0.66 | 0.771864 |
Target: 5'- ---gGCCGuuGGCGUCCUucaCGGCGuCu -3' miRNA: 3'- ccagCGGCggCUGCAGGG---GCCGCuGc -5' |
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9189 | 3' | -63.1 | NC_002512.2 | + | 110498 | 0.66 | 0.771864 |
Target: 5'- cGG-CGCUuuauaaGCCGAUGcuccUCCCC-GCGGCGg -3' miRNA: 3'- -CCaGCGG------CGGCUGC----AGGGGcCGCUGC- -5' |
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9189 | 3' | -63.1 | NC_002512.2 | + | 56510 | 0.66 | 0.771864 |
Target: 5'- --cCGCCGCggCGGCGaaCCCCgggucgggGGCGGCGg -3' miRNA: 3'- ccaGCGGCG--GCUGCa-GGGG--------CCGCUGC- -5' |
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9189 | 3' | -63.1 | NC_002512.2 | + | 28812 | 0.66 | 0.771012 |
Target: 5'- cGUCuGCCG-CGACGUCagcguggccgacaUCgGGCGGCGg -3' miRNA: 3'- cCAG-CGGCgGCUGCAG-------------GGgCCGCUGC- -5' |
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9189 | 3' | -63.1 | NC_002512.2 | + | 79923 | 0.66 | 0.766739 |
Target: 5'- cGGagGCCGCCggGgaggcgaucgagaucGCGUUCUCGGaCGACGa -3' miRNA: 3'- -CCagCGGCGG--C---------------UGCAGGGGCC-GCUGC- -5' |
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9189 | 3' | -63.1 | NC_002512.2 | + | 109222 | 0.66 | 0.763303 |
Target: 5'- cGGcC-CUGCUGACGgaCCCgGGCGACc -3' miRNA: 3'- -CCaGcGGCGGCUGCa-GGGgCCGCUGc -5' |
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9189 | 3' | -63.1 | NC_002512.2 | + | 147520 | 0.66 | 0.763303 |
Target: 5'- cGUC-CCGCCGA---UCCCGGCG-CGa -3' miRNA: 3'- cCAGcGGCGGCUgcaGGGGCCGCuGC- -5' |
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9189 | 3' | -63.1 | NC_002512.2 | + | 9634 | 0.66 | 0.763303 |
Target: 5'- aGGcCGUgGCCuGCGUCgCCCGG-GACc -3' miRNA: 3'- -CCaGCGgCGGcUGCAG-GGGCCgCUGc -5' |
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9189 | 3' | -63.1 | NC_002512.2 | + | 123903 | 0.66 | 0.763303 |
Target: 5'- cGGcCGCCG-CGGCGUuauauaCCCgGGUGAgGg -3' miRNA: 3'- -CCaGCGGCgGCUGCA------GGGgCCGCUgC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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